General information for g9923.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ethanolamine kinase.
Parent gene
- The parent gene g9923 is located on chr_1: 6055381..6058924 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9923 | g9923.t6 | TSS | g9923.t6 | 6054370 | 6054370 |
| chr_1 | g9923 | g9923.t6 | isoform | g9923.t6 | 6054459 | 6056444 |
| chr_1 | g9923 | g9923.t6 | exon | g9923.t6.exon1 | 6054459 | 6054563 |
| chr_1 | g9923 | g9923.t6 | exon | g9923.t6.exon2 | 6054791 | 6054995 |
| chr_1 | g9923 | g9923.t6 | exon | g9923.t6.exon3 | 6055058 | 6055209 |
| chr_1 | g9923 | g9923.t6 | cds | g9923.t6.CDS1 | 6055136 | 6055209 |
| chr_1 | g9923 | g9923.t6 | exon | g9923.t6.exon4 | 6055316 | 6055774 |
| chr_1 | g9923 | g9923.t6 | cds | g9923.t6.CDS2 | 6055316 | 6055774 |
| chr_1 | g9923 | g9923.t6 | exon | g9923.t6.exon5 | 6055854 | 6056444 |
| chr_1 | g9923 | g9923.t6 | cds | g9923.t6.CDS3 | 6055854 | 6055914 |
| chr_1 | g9923 | g9923.t6 | TTS | g9923.t6 | NA | NA |
Sequences
>g9923.t6 Gene=g9923 Length=1512
ATGGAAGAACTTCAAATCAGTGTCGATGAAAATAATTATGAAATAGCAATAAAAAAAATT
TTGAAGACAATCAGGCCAAATTGGAAAGACGATGATAAATTAAAATTAAAAACCTTTACT
GATGGAATTACTAATAAATTGATTGGTTGCTTCTACTCGGATATTCAAAGTAATTTTAAT
GACACTGTTTTAATAAGAATTTATGGCAATAAAACTGATTTATTGATTGATCGAAATGCT
GAAAAATTCAATATAAAATTACTACACAAAAATGGACTTGCCCCAGAACTTTATGCGACT
TTTTTAAATGATATGGAGACTAGTTGCAACGCACATGGCACACATGCATAAACTACCGTT
AAATTCTGAGCAAGCAAAAAAAGAACCAATGCTAAAGACTAAAACATTACAATTTTTAAA
CTTGATTCCAAAAAAATTCTCTGATGCCAAAATGAACGAGAGGGTCGCAAATATATTTCC
ATCAGTTTCAAAATTGCGCGAGGAATTTGACTCGTTATATGATGCACTTCAACGAACAAA
TTCACCCGTACTATTCTGTCATAATGATTTATTGCTGGGCAATGTTATATATACAGAAGA
AATTAATAAAGTGACATTTATCGATTATGAATATGCTGAACCTAATCATCAAGCATTTGA
CATAGGGAATCACTTTGCCGAATTTCCTGGTATTGGATCTAATTCATCCATTGACTATGA
AAAATATCCGCCACGCGAATTTCAACTTCAATGGTTAAGAGTCTATCTCGAAGAATATCA
TAAAAATTCGACAATAAGTGATGAAAGCGTTGAAGAACTTTACAAGCAAGTTAATAAATT
TGCTTTAGCATCACATTTTTTATGGACATGTTGGAGTTTGATTCAGGCAGAACATTCGAC
AATAGATTTTGATTTTATTGCATTTGGAGCAAGTCGTTACAACGAATATTTAGCGAAAAA
AGATGTTTTCTTGAATCTTTAAATTTTGAGTTAAATACATATCAATTATTATTTGTTAAA
ATTAAATTGGACCAAAAATTCGTTTATTAATTAGAAGAATTGAATTCTAAATTAGGCATT
CATTCCATAATTATTTTTACCTAATCAATTTCCACTCTTTATATTTCTTCTCGTTTGTAC
TTGTTGAATTTAAAAGCATGTGTAACAAAACTTTTTATTCTGTAATCTTTTAAGTGTTTT
AGGAGTAAGAATGAATTTTAAATTTAATCTGAAAAGAAGAAAAATCTTTTCTACTCTTTA
TTGTATGTTTTATTTAATTGAACAAAAAAAAGCAATAATTGTGAACGTCAGTATATATTG
TAAATTTCCATTATATTTTATTATTCTGTCCTAACAAACACTTTTTATATTCCACAAAAA
ATATATTCTTAAAAATATTATAAAATTTTCTTTAGTCAAAAAATAAATGCATCAAGTTCC
ATTATTAAATTTGCACTTTCATTTTCCTTATAACAATGTGTTTAGAACACATTTAAAGGA
GTTTAATTTGTT
>g9923.t6 Gene=g9923 Length=197
MLKTKTLQFLNLIPKKFSDAKMNERVANIFPSVSKLREEFDSLYDALQRTNSPVLFCHND
LLLGNVIYTEEINKVTFIDYEYAEPNHQAFDIGNHFAEFPGIGSNSSIDYEKYPPREFQL
QWLRVYLEEYHKNSTISDESVEELYKQVNKFALASHFLWTCWSLIQAEHSTIDFDFIAFG
ASRYNEYLAKKDVFLNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9923.t6 | Gene3D | G3DSA:3.90.1200.10 | - | 1 | 193 | 0 |
| 2 | g9923.t6 | PANTHER | PTHR22603 | CHOLINE/ETHANOALAMINE KINASE | 26 | 195 | 0 |
| 3 | g9923.t6 | PANTHER | PTHR22603:SF76 | ETHANOLAMINE KINASE 2 | 26 | 195 | 0 |
| 1 | g9923.t6 | Pfam | PF01633 | Choline/ethanolamine kinase | 20 | 117 | 0 |
| 4 | g9923.t6 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 8 | 194 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K00894 (ethanolamine kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
