General information for g9923.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ethanolamine kinase.
Parent gene
- The parent gene g9923 is located on chr_1: 6055381..6058924 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9923 | g9923.t8 | TSS | g9923.t8 | 6054370 | 6054370 |
| chr_1 | g9923 | g9923.t8 | isoform | g9923.t8 | 6055058 | 6056377 |
| chr_1 | g9923 | g9923.t8 | exon | g9923.t8.exon1 | 6055058 | 6055209 |
| chr_1 | g9923 | g9923.t8 | cds | g9923.t8.CDS1 | 6055082 | 6055209 |
| chr_1 | g9923 | g9923.t8 | exon | g9923.t8.exon2 | 6055316 | 6055774 |
| chr_1 | g9923 | g9923.t8 | cds | g9923.t8.CDS2 | 6055316 | 6055774 |
| chr_1 | g9923 | g9923.t8 | exon | g9923.t8.exon3 | 6055854 | 6056377 |
| chr_1 | g9923 | g9923.t8 | cds | g9923.t8.CDS3 | 6055854 | 6055914 |
| chr_1 | g9923 | g9923.t8 | TTS | g9923.t8 | 6056378 | 6056378 |
Sequences
>g9923.t8 Gene=g9923 Length=1135
ATATGGAGACTAGTTGCAACGCACATGGCACACATGCATAAACTACCGTTAAATTCTGAG
CAAGCAAAAAAAGAACCAATGCTAAAGACTAAAACATTACAATTTTTAAACTTGATTCCA
AAAAAATTCTCTGATGCCAAAATGAACGAGAGGGTCGCAAATATATTTCCATCAGTTTCA
AAATTGCGCGAGGAATTTGACTCGTTATATGATGCACTTCAACGAACAAATTCACCCGTA
CTATTCTGTCATAATGATTTATTGCTGGGCAATGTTATATATACAGAAGAAATTAATAAA
GTGACATTTATCGATTATGAATATGCTGAACCTAATCATCAAGCATTTGACATAGGGAAT
CACTTTGCCGAATTTCCTGGTATTGGATCTAATTCATCCATTGACTATGAAAAATATCCG
CCACGCGAATTTCAACTTCAATGGTTAAGAGTCTATCTCGAAGAATATCATAAAAATTCG
ACAATAAGTGATGAAAGCGTTGAAGAACTTTACAAGCAAGTTAATAAATTTGCTTTAGCA
TCACATTTTTTATGGACATGTTGGAGTTTGATTCAGGCAGAACATTCGACAATAGATTTT
GATTTTATTGCATTTGGAGCAAGTCGTTACAACGAATATTTAGCGAAAAAAGATGTTTTC
TTGAATCTTTAAATTTTGAGTTAAATACATATCAATTATTATTTGTTAAAATTAAATTGG
ACCAAAAATTCGTTTATTAATTAGAAGAATTGAATTCTAAATTAGGCATTCATTCCATAA
TTATTTTTACCTAATCAATTTCCACTCTTTATATTTCTTCTCGTTTGTACTTGTTGAATT
TAAAAGCATGTGTAACAAAACTTTTTATTCTGTAATCTTTTAAGTGTTTTAGGAGTAAGA
ATGAATTTTAAATTTAATCTGAAAAGAAGAAAAATCTTTTCTACTCTTTATTGTATGTTT
TATTTAATTGAACAAAAAAAAGCAATAATTGTGAACGTCAGTATATATTGTAAATTTCCA
TTATATTTTATTATTCTGTCCTAACAAACACTTTTTATATTCCACAAAAAATATATTCTT
AAAAATATTATAAAATTTTCTTTAGTCAAAAAATAAATGCATCAAGTTCCATTAT
>g9923.t8 Gene=g9923 Length=215
MAHMHKLPLNSEQAKKEPMLKTKTLQFLNLIPKKFSDAKMNERVANIFPSVSKLREEFDS
LYDALQRTNSPVLFCHNDLLLGNVIYTEEINKVTFIDYEYAEPNHQAFDIGNHFAEFPGI
GSNSSIDYEKYPPREFQLQWLRVYLEEYHKNSTISDESVEELYKQVNKFALASHFLWTCW
SLIQAEHSTIDFDFIAFGASRYNEYLAKKDVFLNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9923.t8 | Gene3D | G3DSA:3.90.1200.10 | - | 1 | 211 | 0 |
| 2 | g9923.t8 | PANTHER | PTHR22603 | CHOLINE/ETHANOALAMINE KINASE | 1 | 213 | 0 |
| 3 | g9923.t8 | PANTHER | PTHR22603:SF76 | ETHANOLAMINE KINASE 2 | 1 | 213 | 0 |
| 1 | g9923.t8 | Pfam | PF01633 | Choline/ethanolamine kinase | 1 | 134 | 0 |
| 4 | g9923.t8 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 212 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
