General information for g9923.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ethanolamine kinase.
Parent gene
- The parent gene g9923 is located on chr_1: 6055381..6058924 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9923 | g9923.t9 | TSS | g9923.t9 | 6054370 | 6054370 |
| chr_1 | g9923 | g9923.t9 | isoform | g9923.t9 | 6055381 | 6056377 |
| chr_1 | g9923 | g9923.t9 | exon | g9923.t9.exon1 | 6055381 | 6055774 |
| chr_1 | g9923 | g9923.t9 | cds | g9923.t9.CDS1 | 6055383 | 6055774 |
| chr_1 | g9923 | g9923.t9 | exon | g9923.t9.exon2 | 6055854 | 6056377 |
| chr_1 | g9923 | g9923.t9 | cds | g9923.t9.CDS2 | 6055854 | 6055914 |
| chr_1 | g9923 | g9923.t9 | TTS | g9923.t9 | 6056378 | 6056378 |
Sequences
>g9923.t9 Gene=g9923 Length=918
TTCAACGAACAAATTCACCCGTACTATTCTGTCATAATGATTTATTGCTGGGCAATGTTA
TATATACAGAAGAAATTAATAAAGTGACATTTATCGATTATGAATATGCTGAACCTAATC
ATCAAGCATTTGACATAGGGAATCACTTTGCCGAATTTCCTGGTATTGGATCTAATTCAT
CCATTGACTATGAAAAATATCCGCCACGCGAATTTCAACTTCAATGGTTAAGAGTCTATC
TCGAAGAATATCATAAAAATTCGACAATAAGTGATGAAAGCGTTGAAGAACTTTACAAGC
AAGTTAATAAATTTGCTTTAGCATCACATTTTTTATGGACATGTTGGAGTTTGATTCAGG
CAGAACATTCGACAATAGATTTTGATTTTATTGCATTTGGAGCAAGTCGTTACAACGAAT
ATTTAGCGAAAAAAGATGTTTTCTTGAATCTTTAAATTTTGAGTTAAATACATATCAATT
ATTATTTGTTAAAATTAAATTGGACCAAAAATTCGTTTATTAATTAGAAGAATTGAATTC
TAAATTAGGCATTCATTCCATAATTATTTTTACCTAATCAATTTCCACTCTTTATATTTC
TTCTCGTTTGTACTTGTTGAATTTAAAAGCATGTGTAACAAAACTTTTTATTCTGTAATC
TTTTAAGTGTTTTAGGAGTAAGAATGAATTTTAAATTTAATCTGAAAAGAAGAAAAATCT
TTTCTACTCTTTATTGTATGTTTTATTTAATTGAACAAAAAAAAGCAATAATTGTGAACG
TCAGTATATATTGTAAATTTCCATTATATTTTATTATTCTGTCCTAACAAACACTTTTTA
TATTCCACAAAAAATATATTCTTAAAAATATTATAAAATTTTCTTTAGTCAAAAAATAAA
TGCATCAAGTTCCATTAT
>g9923.t9 Gene=g9923 Length=150
QRTNSPVLFCHNDLLLGNVIYTEEINKVTFIDYEYAEPNHQAFDIGNHFAEFPGIGSNSS
IDYEKYPPREFQLQWLRVYLEEYHKNSTISDESVEELYKQVNKFALASHFLWTCWSLIQA
EHSTIDFDFIAFGASRYNEYLAKKDVFLNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9923.t9 | Gene3D | G3DSA:3.90.1200.10 | - | 1 | 146 | 0 |
| 2 | g9923.t9 | PANTHER | PTHR22603 | CHOLINE/ETHANOALAMINE KINASE | 2 | 148 | 0 |
| 3 | g9923.t9 | PANTHER | PTHR22603:SF76 | ETHANOLAMINE KINASE 2 | 2 | 148 | 0 |
| 1 | g9923.t9 | Pfam | PF01633 | Choline/ethanolamine kinase | 2 | 70 | 0 |
| 4 | g9923.t9 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 3 | 147 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K00894 (ethanolamine kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed