Gene loci information

Transcript annotation

  • This transcript has been annotated as NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9926 g9926.t7 TTS g9926.t7 6058670 6058670
chr_1 g9926 g9926.t7 isoform g9926.t7 6059491 6061368
chr_1 g9926 g9926.t7 exon g9926.t7.exon1 6059491 6060857
chr_1 g9926 g9926.t7 cds g9926.t7.CDS1 6059493 6060857
chr_1 g9926 g9926.t7 exon g9926.t7.exon2 6060910 6061074
chr_1 g9926 g9926.t7 cds g9926.t7.CDS2 6060910 6061068
chr_1 g9926 g9926.t7 exon g9926.t7.exon3 6061318 6061368
chr_1 g9926 g9926.t7 TSS g9926.t7 6061350 6061350

Sequences

>g9926.t7 Gene=g9926 Length=1583
AAAATAAAAAATCTCTTCTTCGTAGTAAATTTTGGCTGAAATAATTTTAAGTCAAACATG
CTCCGTGTTCCATTGACACGGGCCGTTTTGGCCCAATCTCAGCGAGCTGGAGTGTTGGCT
ACATCAAAGAGAATGCAATCAAAAGCACCGGAAAAAGTCGAAGTGTTTATTGATGATCAG
CCAGTAATGGTTTTACCAGGAACTACAGTTTTACAGGCAGCAGCACAAGTTGGAATTGAG
ATTCCAAGATTTTGTTATCATGAACGTTTAGCTGTCGCAGGAAATTGCCGTATGTGCTTA
GTTGAAGTTGAAAAGAGTCCTAAACCAGTCGCTGCATGTGCAATGCCAGTCATGAAGGGA
TGGAGAATCAAGACAAATTCAGAAATGACACGTCGTGCACGTGAAGGTGTCATGGAATTT
CTTCTTGCAAATCATCCACTTGATTGCCCAATTTGTGATCAAGGTGGTGAGTGCGATTTA
CAAGATCAAGCAATGTCATTCGGTTCAGATCGTTCACGTTTTACTGACATCGATCACGCC
GGCAAAAGAGCAGTTGAAGATAAAGATATTGGTCCATTAATAAAAACCACTATGACTCGT
TGCATTCATTGTACACGTTGCATTAGATTTGCCTCAGAAGTTGCCGGAGTTGATGATTTG
GGCACAACTGGAAGAGGCAATGACATGCAAGTAGGAACATATGTTGAGAAATTATTCCTC
TCTGAAATATCTGGAAATGTAATTGATTTGTGTCCAGTCGGTGCACTCACCAATAAACCA
TACAGTTTTGTTGCTCGTCCATGGGAAATCAGAAGAATCGATAGTATCGATGTACTCGAT
GCACTTGGTAGCAATATTACAGTAAATACAAGAACTGGTGAAGTATTGCGAATTCTTCCT
CGTGAAAATGAAGACATTAATGAAGAATGGCTCTCGGATAAATCGAGATTTGCTTGTGAT
GGATTAAAACGTCAACGTTTAATTACACCAATGTTGCGAAAACCAGATGGTGAATTAGAA
GCTGTCGAATGGGAAACAGCTTTGATTGGTGTTGCTCAAGCTGTCAAAAATGCAGGAAGC
AAAGTTGCAGCAGTTGCTGGTAGTTTTGTCGATGCTGAACAACTTGTTGCAGTAAAAGAT
TTGTTAAATCGTCTCGGATCAGAATTGCTTTGTACTGAGCAAAAGTTCCCAACATCTGAT
GGACTATCTGGAATAGATTTCAGATCAAATTACTTACTCAATTCATCAATTGCTGCATGC
GAAGATGCCGATTTAGTTCTTTTAGTCGGCACAAATCCAAGATATGAAGCTCCATTATTA
AACACACGATTGCGCAAAGGCTATGTTCATAAAGAGCTTGATGTTGCAGTAATTGGTCCA
CAAATTGATTTGTCATATCGTCATGAGCATCTCGGTAGTAATGCATCAATTATTCAAGAT
ATTGTTAGTGGAAAACATCCCTTCGCTAAACGTTTAAAATCAGCTAAACGTCCATTAATA
ATTGTTGGTGCTAATGCTCTTTCACGTAATGATGGCAAAGCCTTTTTGTCATCTCTTCAC
TCATTCGCAAATCAATTGAAACC

>g9926.t7 Gene=g9926 Length=508
MLRVPLTRAVLAQSQRAGVLATSKRMQSKAPEKVEVFIDDQPVMVLPGTTVLQAAAQVGI
EIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGWRIKTNSEMTRRAREGVME
FLLANHPLDCPICDQGGECDLQDQAMSFGSDRSRFTDIDHAGKRAVEDKDIGPLIKTTMT
RCIHCTRCIRFASEVAGVDDLGTTGRGNDMQVGTYVEKLFLSEISGNVIDLCPVGALTNK
PYSFVARPWEIRRIDSIDVLDALGSNITVNTRTGEVLRILPRENEDINEEWLSDKSRFAC
DGLKRQRLITPMLRKPDGELEAVEWETALIGVAQAVKNAGSKVAAVAGSFVDAEQLVAVK
DLLNRLGSELLCTEQKFPTSDGLSGIDFRSNYLLNSSIAACEDADLVLLVGTNPRYEAPL
LNTRLRKGYVHKELDVAVIGPQIDLSYRHEHLGSNASIIQDIVSGKHPFAKRLKSAKRPL
IIVGANALSRNDGKAFLSSLHSFANQLK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g9926.t7 CDD cd00207 fer2 33 105 3.06285E-11
10 g9926.t7 Gene3D G3DSA:3.10.20.740 - 33 155 4.5E-40
9 g9926.t7 Gene3D G3DSA:3.30.70.20 - 162 240 8.1E-7
4 g9926.t7 PANTHER PTHR11615 NITRATE, FORMATE, IRON DEHYDROGENASE 28 504 1.1E-135
5 g9926.t7 PANTHER PTHR11615:SF6 NADH-UBIQUINONE OXIDOREDUCTASE 75 KDA SUBUNIT, MITOCHONDRIAL 28 504 1.1E-135
2 g9926.t7 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 32 108 3.3E-18
1 g9926.t7 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 115 154 2.9E-17
3 g9926.t7 Pfam PF00384 Molybdopterin oxidoreductase 307 504 9.5E-33
13 g9926.t7 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 63 80 -
12 g9926.t7 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 130 142 -
14 g9926.t7 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 181 191 -
17 g9926.t7 ProSiteProfiles PS51085 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 32 110 10.3
18 g9926.t7 ProSiteProfiles PS51839 His(Cys)3-ligated-type [4Fe-4S] domain profile. 110 149 16.387
19 g9926.t7 ProSiteProfiles PS51669 Prokaryotic molybdopterin oxidoreductases 4Fe-4S domain profile. 251 307 18.835
15 g9926.t7 SMART SM00929 NADH_G_4Fe_4S_3_2 115 155 1.2E-20
6 g9926.t7 SUPERFAMILY SSF54292 2Fe-2S ferredoxin-like 34 106 1.08E-19
8 g9926.t7 SUPERFAMILY SSF54862 4Fe-4S ferredoxins 107 247 2.8E-35
7 g9926.t7 SUPERFAMILY SSF53706 Formate dehydrogenase/DMSO reductase, domains 1-3 249 494 3.66E-49
16 g9926.t7 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 36 508 1.1E-190

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0009055 electron transfer activity MF
GO:0016651 oxidoreductase activity, acting on NAD(P)H MF
GO:0042773 ATP synthesis coupled electron transport BP
GO:0055114 NA NA
GO:0051536 iron-sulfur cluster binding MF
GO:0008137 NADH dehydrogenase (ubiquinone) activity MF
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values