Gene loci information

Transcript annotation

  • This transcript has been annotated as Phosphatidylinositol 4-kinase type 2-beta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9929 g9929.t7 isoform g9929.t7 6064968 6066487
chr_1 g9929 g9929.t7 exon g9929.t7.exon1 6064968 6065365
chr_1 g9929 g9929.t7 cds g9929.t7.CDS1 6065154 6065365
chr_1 g9929 g9929.t7 exon g9929.t7.exon2 6065427 6065702
chr_1 g9929 g9929.t7 cds g9929.t7.CDS2 6065427 6065702
chr_1 g9929 g9929.t7 exon g9929.t7.exon3 6065769 6066487
chr_1 g9929 g9929.t7 cds g9929.t7.CDS3 6065769 6065853
chr_1 g9929 g9929.t7 TSS g9929.t7 NA NA
chr_1 g9929 g9929.t7 TTS g9929.t7 NA NA

Sequences

>g9929.t7 Gene=g9929 Length=1393
GATGCAGATCACTGGTTAAGACGTTTTGAACAAGAACCACTCTCACCGAAAGTTGCTCAA
AAATTTCAATATCAATTTGAAAGACTCGTTGTTTTAGATTATATCATACGCAACACAGAT
CGAGGTAATGATAATTGGCTAATAAAATATGATCAACCATCAGTAAATCATTCGAAAAAT
GGAAGTATGAATGGAAGTGCAAATTCTATTAATAATAATTTTATCACACTCACTACACCA
ACTAATAACATTCCCAATGGATTAAGTCATAGTAACAGTTCTGGATCGTTTCATAAAGAT
GATGATAGTTGGAATGTTGTAGATCTACCCGAAATTAGAATAGCCGCTATCGATAATGGT
TTAGCTTTTCCATTTAAGCATCCAGACTCTTGGAGAGCTTATCCTTACCATTGGGCGTGG
TTACCACAGGCTAAGGTTCCTTTTAGTCAAGAGATCAAAGATTTAGTTCTTCCTCTATTG
TCCGATTTAAATTTTGTTGAAGAATTGTGCAATGATCTATTAGAATTGTTTAGGCAAGAT
AAAGGTTTTGATAGAGGTTTATTTGAAAAACAAATGTCAGTGATGCGTGGTCAAATTCTA
AATTTAACTCAAGCACTAAAAGATGGAAAGAGCCCAGTACAACTCGTTCAAATGCCTGCA
GTGATTGTTGAAAGATCAAAAATAAATCAAGAAGCATCACGATTCGGATCTTTTAAACAG
CGATTTCAAAATAAAAGTCCTTTCTTCAGCTGGTGCTGATTTGAAAATAATGATAAAGTT
TGGAAGTTATTATCAAAAACTATAATCTTTGTATATTAAGAAGAGGACAAGAAAAAATAC
TTTAGTAACTTCATCATCATTTGCCTTACTATCATTATTCACCATAATATATGGGGACCT
GCAACACTTAAATTTCGACTGTATGCATGCTGATACGAAATAAAAAGTGATAGTTTGTCT
CATATAATTAGATAGTTACTTTATGCTAAAACAAATCTAGTAAGGAGATTAAGACATCTA
ATGTTTGATTCAGTGAAAGTAAAAAACAAAATATAATGAAATTATTAAAATAGCTATTAT
ATAATAGCCTAAACTTATGAAAATATATCATACATTCCATTTGATTCGAGCTTATTTGCT
GGATAAAAGTTTTCCCTTTTCGTTATCCTGATAAATTTTTTTATTTCGTTCTGTTTTAAA
CTACCAAACCTTTGCTGCTAGTCGCTTTAAACTTTGTGCATGTGGTTTATTTATTGCAGT
TTTTACAATTTTTTTTGTTTTTGATAATTTATCTTGCTCTCTTTTTCTTTTTATCATCAA
ATGGCATCAAAATGTACTTTTTTTCTTTTTTGATCATTATTTATGATAATAAAAAGTCTA
TTTATTGAAATTA

>g9929.t7 Gene=g9929 Length=190
MNGSANSINNNFITLTTPTNNIPNGLSHSNSSGSFHKDDDSWNVVDLPEIRIAAIDNGLA
FPFKHPDSWRAYPYHWAWLPQAKVPFSQEIKDLVLPLLSDLNFVEELCNDLLELFRQDKG
FDRGLFEKQMSVMRGQILNLTQALKDGKSPVQLVQMPAVIVERSKINQEASRFGSFKQRF
QNKSPFFSWC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g9929.t7 PANTHER PTHR12865 PHOSPHATIDYLINOSITOL 4-KINASE TYPE-II 32 188 0
3 g9929.t7 PANTHER PTHR12865:SF6 PHOSPHATIDYLINOSITOL 4-KINASE TYPE 2-BETA 32 188 0
1 g9929.t7 Pfam PF00454 Phosphatidylinositol 3- and 4-kinase 51 139 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004430 1-phosphatidylinositol 4-kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values