General information for g993.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g993 is located on chr_3: 7306154..7306826 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g993 | g993.t7 | isoform | g993.t7 | 7305299 | 7306764 |
| chr_3 | g993 | g993.t7 | exon | g993.t7.exon1 | 7305299 | 7305815 |
| chr_3 | g993 | g993.t7 | cds | g993.t7.CDS1 | 7305336 | 7305815 |
| chr_3 | g993 | g993.t7 | exon | g993.t7.exon2 | 7305874 | 7306071 |
| chr_3 | g993 | g993.t7 | cds | g993.t7.CDS2 | 7305874 | 7306071 |
| chr_3 | g993 | g993.t7 | exon | g993.t7.exon3 | 7306150 | 7306395 |
| chr_3 | g993 | g993.t7 | cds | g993.t7.CDS3 | 7306150 | 7306395 |
| chr_3 | g993 | g993.t7 | exon | g993.t7.exon4 | 7306453 | 7306764 |
| chr_3 | g993 | g993.t7 | cds | g993.t7.CDS4 | 7306453 | 7306764 |
| chr_3 | g993 | g993.t7 | TTS | g993.t7 | 7307121 | 7307121 |
| chr_3 | g993 | g993.t7 | TSS | g993.t7 | NA | NA |
Sequences
>g993.t7 Gene=g993 Length=1273
CACTGAAACGCCCTATTTTGATGATTATTATTATACCATGTATAAAGAACGTCAACGTTT
ACGTGGCATTGAAAATGAAAGTCAAGCACATCGTGATAATCAATTAAATCATCCTTTTAC
ACAGCCCAAAGGTCACGCGCAAATGCTATTGCGACAATTTAATAATATTGGTAAGAATGG
CATGCAAAATCAAAAGAATGGACTCGGACGTGAGCGACATAATTCAGAATCATCGCAGAA
AAATGAGAAGGAAAATCCCACGCCAAGAACCTATACACCATTGCAATTTGAGAACTCACT
TGGAAAATTACAATGTGGGAGTGTTACAGCACCAAGAAAAATTATTGATATGGAAGTTGT
TGGAAATGCTGAAAATGGACAAGGTGGTGTGTCCGAATTGACAATTCAAAAAAGATCGAG
ACAAATTTTGATGCATATTGAGTTGCTTTATAAAATTGTGTTGAAACTTGAAGATTTACA
ACATCCTATGGCTATTGCTGCTTCTATTATTTTAAAGGAAAAACGTGAAAAGCAACGTTT
ACAAATGGAGCAAGAAGCAAAAGAGAAACAAAATGAAGATGAGTCAAGCATTAGTTCAGC
TAAATCATCAATTTCATTGAATGAACCAGAAACACAAAGTGAATTAATGACAAAATTGCT
TGCATTGCTTTCGGTTGAAAAAGTGCCAGGAATTATGGCAGTACGCAAAGGAAGAGCACT
TCTTAAGCGTCTTTTTCCTCACATTAAAGATCAACCAATACGCTGGGACATGTGGAATGC
AATTTTCATCTCACTGACTGTGTTCAAGCGTGATAAATTGGAAGAGATTGAAGATTCTCT
TATGGCCCTCTATTATGAGTTTGCAGTGCAATTGCAGGATGCTGATTTCACTGACTTGCT
TAAAATTACAAATAACATGATGACAAGTGAGAAATTAATGGGATATGTTAATGGCTGCAA
GTTTGTTGTATCAAGCATAATCGCAATGATTATCAAATGTGAGTTGCTTTACCAAAAATC
AGGTGATTCAATAAACTTCAGTGAAGAAGAACAATGGATTCGTTTTCTCAATAAATTATT
TGAGATTGTCAATAGTGATCGTACAGTTGATGCGCAAATTTTAAGCTCAGCCAATAATGT
TCATCGTGATAAAAATGATCATGATCGCATAATTCGTACAGTTATTGCAAATTTTCAACG
ATTTAAGCCACGCTTCACTAGCGATGATGAGAAGTTGGTGAAATTGTTGGGAATTCAGTA
TGATGTTAAATAA
>g993.t7 Gene=g993 Length=411
MYKERQRLRGIENESQAHRDNQLNHPFTQPKGHAQMLLRQFNNIGKNGMQNQKNGLGRER
HNSESSQKNEKENPTPRTYTPLQFENSLGKLQCGSVTAPRKIIDMEVVGNAENGQGGVSE
LTIQKRSRQILMHIELLYKIVLKLEDLQHPMAIAASIILKEKREKQRLQMEQEAKEKQNE
DESSISSAKSSISLNEPETQSELMTKLLALLSVEKVPGIMAVRKGRALLKRLFPHIKDQP
IRWDMWNAIFISLTVFKRDKLEEIEDSLMALYYEFAVQLQDADFTDLLKITNNMMTSEKL
MGYVNGCKFVVSSIIAMIIKCELLYQKSGDSINFSEEEQWIRFLNKLFEIVNSDRTVDAQ
ILSSANNVHRDKNDHDRIIRTVIANFQRFKPRFTSDDEKLVKLLGIQYDVK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g993.t7 | Coils | Coil | Coil | 158 | 181 | - |
| 5 | g993.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - |
| 8 | g993.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - |
| 6 | g993.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 78 | - |
| 4 | g993.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 71 | - |
| 3 | g993.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 183 | - |
| 7 | g993.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 197 | - |
| 1 | g993.t7 | PANTHER | PTHR21551 | TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 | 9 | 359 | 6.1E-36 |
| 2 | g993.t7 | PANTHER | PTHR21551:SF0 | PROTEIN ASSOCIATED WITH TOPO II RELATED-1, ISOFORM A | 9 | 359 | 6.1E-36 |
| 10 | g993.t7 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 299 | - |
| 12 | g993.t7 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 300 | 319 | - |
| 11 | g993.t7 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 320 | 411 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000290 | deadenylation-dependent decapping of nuclear-transcribed mRNA | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
