General information for g9931.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ubiquitin thioesterase OTU1.
Parent gene
- The parent gene g9931 is located on chr_1: 6069009..6069944 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9931 | g9931.t2 | TTS | g9931.t2 | 6067754 | 6067754 |
| chr_1 | g9931 | g9931.t2 | isoform | g9931.t2 | 6067759 | 6068647 |
| chr_1 | g9931 | g9931.t2 | exon | g9931.t2.exon1 | 6067759 | 6068647 |
| chr_1 | g9931 | g9931.t2 | cds | g9931.t2.CDS1 | 6067911 | 6068189 |
| chr_1 | g9931 | g9931.t2 | TSS | g9931.t2 | 6069074 | 6069074 |
Sequences
>g9931.t2 Gene=g9931 Length=889
TAATTGTTGATGTAAAGCCTCTCACACAAGAAGAAAAGGATGCAATTGAGCGTGCAAAAA
GACTTGCAGAAGATGAAATTTTAGCGCGACAATTGGCAGAAACATCTGAAAGTGGCAGTA
GTGTAGCAAATGGAATATTATTAAAACAAGTTGTTGCAGCTGATAACAGTTGTCTATTTA
CAAGCATTGGATTTCTTGTTTCAGGAAAAGTTGATACAAGCATTGGACCATATTTGCGAC
AAATCATAGCTCAAACTGTTCACAATGAAAGAGAAACATACAACGATGGTATCTTAGGTC
GAAATAATGCAGATTATGTTGCATGGATTATTCAAGAGTCTTCATGGGGAGGTGCGATAG
AAGTTGGTATCCTATCTGCTCATTATGGAATTGAATTCGACGTCGTTGACATAACTAATG
CAGCAATATGCAGATTTGGTGAAGACAAAAAATATCCAATGAGAGGATTCTTGCTATATG
ATGGAATTCATTATGATCCGTTATATCTCGAATCACTTAATGGTGATGGACAAAAGACTT
TGTTTTCAGTTGAAGATGAAGAATACGTATATGAAATGGCTCAGAACTTAGCAAAAGAGG
CTCAAAGTAGTCGACAATTTACAGATGTCGATAAATTTACATTACGTTGCATACAGTGCG
ATAAGAAATTAAAAGGTCAAGTCCAAGCCACAGAACATGCTAAAGAAACAGGTCACACTC
AGTTTGGAGAATTTTGAGATATTGCTATTATTATTTAATCACTCACTTTCGTACACATAA
ACCTTAAAATTTAGAAAAAAATGCAAAATTTTTTAACATTTCCTTTTTTTTGGAATTTCA
CTTTTTATTGTGTTAAAATAAAATTAAAGGCTTAAAACTAAATATATTT
>g9931.t2 Gene=g9931 Length=92
MRGFLLYDGIHYDPLYLESLNGDGQKTLFSVEDEEYVYEMAQNLAKEAQSSRQFTDVDKF
TLRCIQCDKKLKGQVQATEHAKETGHTQFGEF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g9931.t2 | Gene3D | G3DSA:3.90.70.80 | - | 1 | 58 | 1.8E-11 |
| 1 | g9931.t2 | PANTHER | PTHR13312:SF0 | UBIQUITIN THIOESTERASE OTU1 | 2 | 91 | 1.6E-27 |
| 2 | g9931.t2 | PANTHER | PTHR13312 | HIV-INDUCED PROTEIN-7-LIKE PROTEASE | 2 | 91 | 1.6E-27 |
| 3 | g9931.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 64 | 86 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0101005 | deubiquitinase activity | MF |
| GO:0004843 | thiol-dependent deubiquitinase | MF |
| GO:0030433 | ubiquitin-dependent ERAD pathway | BP |
| GO:0016579 | protein deubiquitination | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
