Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative 40S ribosomal protein S14.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9932 g9932.t15 TSS g9932.t15 6069379 6069379
chr_1 g9932 g9932.t15 isoform g9932.t15 6069414 6069944
chr_1 g9932 g9932.t15 exon g9932.t15.exon1 6069414 6069637
chr_1 g9932 g9932.t15 cds g9932.t15.CDS1 6069414 6069637
chr_1 g9932 g9932.t15 exon g9932.t15.exon2 6069726 6069944
chr_1 g9932 g9932.t15 cds g9932.t15.CDS2 6069726 6069861
chr_1 g9932 g9932.t15 TTS g9932.t15 6070062 6070062

Sequences

>g9932.t15 Gene=g9932 Length=443
ATGGCTCCAAGAAAGAATAAAGTTGCGAAAGAAGAAGTTCAAGTATCACTCGGACCTCAA
GTTCGTGAAGGAGAAATTGTTTTCGGTGTTGCACACATCTATGCTAGTTTCAATGATACT
TTTGTTCATGTCACCGATTTATCAGGCAAAGAAACAATTTCACGCGTTACTGGCGGTATG
AAAGTAAAAGCCGATCGTGATGAGGCATCTCCCTATGCTGCTATGATGTTGCTGAAAAAT
GCAAAACTCTTGGAATCACAGCCCTTCACATTAAATTACGTGCAACTGGTGGAAACAGAA
CAAAAACACCTGGACCAGGAGCTCAATCAGCTTTACGTGCTTTGGCTCGTTCAAACATGA
AAATCGGTCGCATTGAAGATGTCACTCCAATTCCATCAGATTCAACACGCCGAAAGGGTG
GCAGACGTGGTCGCCGATTGTAA

>g9932.t15 Gene=g9932 Length=119
MAPRKNKVAKEEVQVSLGPQVREGEIVFGVAHIYASFNDTFVHVTDLSGKETISRVTGGM
KVKADRDEASPYAAMMLLKNAKLLESQPFTLNYVQLVETEQKHLDQELNQLYVLWLVQT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g9932.t15 Gene3D G3DSA:3.30.420.80 - 1 104 0
2 g9932.t15 PANTHER PTHR11759:SF37 BNAA05G27530D PROTEIN 4 76 0
3 g9932.t15 PANTHER PTHR11759 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 4 76 0
1 g9932.t15 Pfam PF00411 Ribosomal protein S11 29 81 0
4 g9932.t15 SUPERFAMILY SSF53137 Translational machinery components 24 81 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005840 ribosome CC
GO:0006412 translation BP
GO:0003735 structural constituent of ribosome MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed