Gene loci information

Transcript annotation

  • This transcript has been annotated as 40S ribosomal protein S14.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9932 g9932.t9 TSS g9932.t9 6069379 6069379
chr_1 g9932 g9932.t9 isoform g9932.t9 6069380 6073992
chr_1 g9932 g9932.t9 exon g9932.t9.exon1 6069380 6069650
chr_1 g9932 g9932.t9 cds g9932.t9.CDS1 6069414 6069650
chr_1 g9932 g9932.t9 exon g9932.t9.exon2 6069726 6069837
chr_1 g9932 g9932.t9 cds g9932.t9.CDS2 6069726 6069837
chr_1 g9932 g9932.t9 exon g9932.t9.exon3 6073931 6073992
chr_1 g9932 g9932.t9 cds g9932.t9.CDS3 6073931 6073956
chr_1 g9932 g9932.t9 TTS g9932.t9 NA NA

Sequences

>g9932.t9 Gene=g9932 Length=445
ATTTCAATTCGAGTTATTCAGATAGTGAATAAACATGGCTCCAAGAAAGAATAAAGTTGC
GAAAGAAGAAGTTCAAGTATCACTCGGACCTCAAGTTCGTGAAGGAGAAATTGTTTTCGG
TGTTGCACACATCTATGCTAGTTTCAATGATACTTTTGTTCATGTCACCGATTTATCAGG
CAAAGAAACAATTTCACGCGTTACTGGCGGTATGAAAGTAAAAGCCGATCGTGATGAGGC
ATCTCCCTATGCTGCTATGTTGGCTGCACAAGATGTTGCTGAAAAATGCAAAACTCTTGG
AATCACAGCCCTTCACATTAAATTACGTGCAACTGGTGGAAACAGAACAAAAACACCTGG
ACCAGGAGCTCAATCAGCTTTACCTATCATCCTACTATCTCACTTCTAATACTCGTATAC
TTAAAGTTCTAATGCTTGATCAATA

>g9932.t9 Gene=g9932 Length=124
MAPRKNKVAKEEVQVSLGPQVREGEIVFGVAHIYASFNDTFVHVTDLSGKETISRVTGGM
KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALPIIL
LSHF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g9932.t9 Gene3D G3DSA:3.30.420.80 - 1 123 0
2 g9932.t9 PANTHER PTHR11759:SF37 BNAA05G27530D PROTEIN 4 116 0
3 g9932.t9 PANTHER PTHR11759 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 4 116 0
6 g9932.t9 PIRSF PIRSF002131 RPS11p_RPS11a_RPS14e_RPS11o 1 117 0
1 g9932.t9 Pfam PF00411 Ribosomal protein S11 29 117 0
4 g9932.t9 SUPERFAMILY SSF53137 Translational machinery components 25 122 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005840 ribosome CC
GO:0006412 translation BP
GO:0003735 structural constituent of ribosome MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed