Gene loci information

Transcript annotation

  • This transcript has been annotated as Glutamate synthase 1 [NADH], chloroplastic.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9933 g9933.t1 isoform g9933.t1 6076806 6087141
chr_1 g9933 g9933.t1 exon g9933.t1.exon1 6076806 6077006
chr_1 g9933 g9933.t1 cds g9933.t1.CDS1 6076806 6077006
chr_1 g9933 g9933.t1 exon g9933.t1.exon2 6077422 6077549
chr_1 g9933 g9933.t1 cds g9933.t1.CDS2 6077422 6077549
chr_1 g9933 g9933.t1 exon g9933.t1.exon3 6079509 6079670
chr_1 g9933 g9933.t1 cds g9933.t1.CDS3 6079509 6079670
chr_1 g9933 g9933.t1 exon g9933.t1.exon4 6079734 6079824
chr_1 g9933 g9933.t1 cds g9933.t1.CDS4 6079734 6079824
chr_1 g9933 g9933.t1 exon g9933.t1.exon5 6079892 6080222
chr_1 g9933 g9933.t1 cds g9933.t1.CDS5 6079892 6080222
chr_1 g9933 g9933.t1 exon g9933.t1.exon6 6080278 6080384
chr_1 g9933 g9933.t1 cds g9933.t1.CDS6 6080278 6080384
chr_1 g9933 g9933.t1 exon g9933.t1.exon7 6080443 6080641
chr_1 g9933 g9933.t1 cds g9933.t1.CDS7 6080443 6080641
chr_1 g9933 g9933.t1 exon g9933.t1.exon8 6080701 6080768
chr_1 g9933 g9933.t1 cds g9933.t1.CDS8 6080701 6080768
chr_1 g9933 g9933.t1 exon g9933.t1.exon9 6081097 6081219
chr_1 g9933 g9933.t1 cds g9933.t1.CDS9 6081097 6081219
chr_1 g9933 g9933.t1 exon g9933.t1.exon10 6081796 6083414
chr_1 g9933 g9933.t1 cds g9933.t1.CDS10 6081796 6083414
chr_1 g9933 g9933.t1 exon g9933.t1.exon11 6083481 6084078
chr_1 g9933 g9933.t1 cds g9933.t1.CDS11 6083481 6084078
chr_1 g9933 g9933.t1 exon g9933.t1.exon12 6084145 6084508
chr_1 g9933 g9933.t1 cds g9933.t1.CDS12 6084145 6084508
chr_1 g9933 g9933.t1 exon g9933.t1.exon13 6084570 6084695
chr_1 g9933 g9933.t1 cds g9933.t1.CDS13 6084570 6084695
chr_1 g9933 g9933.t1 exon g9933.t1.exon14 6084822 6086409
chr_1 g9933 g9933.t1 cds g9933.t1.CDS14 6084822 6086409
chr_1 g9933 g9933.t1 exon g9933.t1.exon15 6086462 6086536
chr_1 g9933 g9933.t1 cds g9933.t1.CDS15 6086462 6086536
chr_1 g9933 g9933.t1 exon g9933.t1.exon16 6086598 6086857
chr_1 g9933 g9933.t1 cds g9933.t1.CDS16 6086598 6086857
chr_1 g9933 g9933.t1 exon g9933.t1.exon17 6086915 6087141
chr_1 g9933 g9933.t1 cds g9933.t1.CDS17 6086915 6087141
chr_1 g9933 g9933.t1 TSS g9933.t1 NA NA
chr_1 g9933 g9933.t1 TTS g9933.t1 NA NA

Sequences

>g9933.t1 Gene=g9933 Length=6267
ATGTCTCCACCCTGCACGAATGATTGCAATGCGACAAGGCCTGATGTTATGAGTAGCGAT
AATGAAATAAGAGAGAATGTTGAGGAAAAATTAATGGATTGGGAAGCTCCAAAAAAACAA
GGACTTTATGATCCACAGAATGAGCATGACGCTTGTGGTGTTGGATTCATCGTTGCTATC
GATGGACGTCGTCATCATAAGATATTACGTGATGCTCAAACATTGGCTGAACGTATGTAT
CACAGAGGCGCTGTTGCATGCGATAATGATACTGGTGATGGATCTGGCGTCATGACAGCT
ATTCCTCATAAACTTTATGCAAAGGAATTAGCATCGCAGGGAATTTCGTTGCCCGAGTTT
GGTAAATATGCAACTGGTATCATTTACTTGGACAAGGATACTCATCTGGAAGCTGAAAAG
GACTTTAATACTTTGGCTGCAAGTCTTGGTATTAATGTAATTGCTTGGCGAACAGTTCCA
ACTGATTCGAGTGCAATTGGTGCAGTTGCTCGTAAAAGTGAACCTTTGTCACGCCAAGTT
TTTGTCACTGCTGACTTGGACGAAGAGGCATTAAAGAAAAAGGTGTTCGTGCTTCGTAAA
CGTGCAACACATGAGCTGGTTAAACCAGGCCGTCGTTTCTACATTAAATCGTTATCAACG
CTAACAATCGTCTATAAAGGTCTCTTCAATTCTGATCAATTGTGGTTATATTATACAGAT
CTTCTCAATCCTGATTTTGACACCTATTTGGCTCTTGTTCATACGCGCTTCAGCACAAAT
ACCTTTCCAGCATGGGAGCGTGCACATCCAATGCGTGTTTTAGCACATAACGGTGAAATT
AACACATTGCGTGGAAATGTCAATTTAATGAAGGCTCGTGAAGGTGTCATGAAGAGCGAT
GAATTTGGAGATGAATTGAAAAAACTCTTTCCTGTCGTTGAGCCGAATTTATCCGATTCT
GGCTCAGCGGATTGTGTGCTTGAATTTTTAACTATGGCTGGTAAAAGATCTTTGCCTGAG
GCTGTAATGACAATGGTCCCAGAAGCATGGCATAATGATAAGACAATGTCACAAGAAAAG
CGTGACTTTTATCGTTGGGCTGCTTGCGTTATGGAGCCTTGGGATGGCCCAGCATTGATT
TCATTCACAGACGGTCGATATATTGGCGCTGTTTTAGATCGTAATGGATTACGTCCATCT
CGTTTTTATGTCACAAGAGATAATATTCTCGTAATGGCATCTGAGGTTGGAGTTTATGAT
GTTGAACCTAAAGATGTTTTATTGAAGAGTCGCTTGAAGCCTGGTCGAATGTTGTTGGTT
GACACAAAAGAGAAAGCTCTTATTCAGGATGTTGAGTTGAAGTCGAAAATTGCCAAATTA
CGACCTCATGGCGAATGGTTGCAACAACAGGTATTCCTACAAGATATTCGTAGAGAGGAT
GCATTGAAGCATGGTGCATTAAGTGCTGTAAGATCAGCTGGTGATTTGAAACGTTTCACT
CGTGGTCTTTTTGATCCACGTCTTACACTTTATGGCTATACCACCGAAACTATTCATATG
CTTTTAATTCCAATGATCAAGAATAAGAAGGAAGCACTTGGTTCAATGGGAAATGACTCA
CCACTTGCTTGTTTATCTAAATTTCAACCATTACCTTACGAGTATTTCAAGCAACTTTTT
GCTCAAGTCACTAATCCACCAATTGATCCATTCAGAGAGAAAATTGTCATGACTGTACAA
TGTCCAATTGGACCTGAATACAATATTTTGGAACCATCTGCACAACAAGTTCATCGTTTA
TGGCTCAATAATCCTATTTTGAGTGTTGCTGATATTCAAATGTTGAAGCGAAGTACTCAT
CGTGGATGGAAAACTTGTGTTATTGATATTACTTTTGATTTCCGTGATGGTATTCAAGGG
TATATTGAGACATTTGATCGAATTTGCAGAGAAGCTCAACGAGCAGCCGAAACTGATCAT
CAACTTATCATCATCTCAGATCGTGCTGGCGGACCTCAATTTTGTCCTATTTCTTCTCTT
CTTGCACTTGGTTGCATTCATCATCATCTCATTGAAACTCGCTTACGTATGAAAGTTGGT
TTGATTGTTGAAACTGCTGAGGCTCGTGAAGTTCATCACATTTGTGTTCTATTGGGCTAT
GGTGCTGATGCTATAAATCCCTATCTTGTCTTTGAATTGGCAAAAACTCTTCGTGATCAA
TGTGTTATCGATCCAGCATTAAGTGATGAAGAAATTTCAAGCTCTTTTGGTAAAGCCATC
GATGTGGGAATGGCAAAAGTTATGGCTAAAATGGGTATCAGTACATTGCAATCATACAAA
GCAGCTCAAATTTTTGAAGCTGTTGGTTTGAGTGAAGAAGTCATTGATCTTTGCTTCAAA
GGAACACAATCACGTATTGGGGGTGTAGGAATGAATATTCTTGCTCGTGAGGGATTAGAA
CGTCATCAATTGAGTTTCCATAATCTCTCGCCAGATGCACAGATTTTACGCAATCCTGGT
AACTTTCATTGGAGACAAGGAGGAGAAGGACATATTAATGAGCCTGGTGCTATTGGTGCT
CTTCAAGAAGCTACAGTCAATGAAAATAAAAACTCATATAAGCAATTCCGTGAAATTACA
ATGGACAGTGTTAAAAAATGTTGCTTACGTGGTCAATTGGATTTTGTGACAGATCGTGAA
AAGATTGACATTTCAGAAGTTGAGCCAGCAAGTGAAATTGTTAAAAGATTTGCTACAGGC
GCAATGTCCTTTGGTTCAATTTCATTAGAAGCGCATACAACACTTGCAATTGCAATGAAT
CGAATTGGAGGCAAAAGCAACACTGGGGAAGGTGGTGAAAATGCTGATCGTTATTTGAAT
CAAGATCCGCATACAAATAAACGTTCTGCTATTAAACAAGTCGCTTCTGGACGTTTCGGT
GTAACTGCAGCATATATAGCCAATTCAGATGATTTACAAATCAAAATGGCTCAAGGTGCT
AAGCCGGGCGAAGGTGGAGAGCTTCCAGGCTATAAGGTTACTAAAGCTATTGCCAAGACT
CGTCATTCTGTCCCTGGAGTTGGTCTAATTTCTCCACCTCCTCATCATGACATCTATTCA
ATTGAGGATTTAGCCGAGTTGATTTATGACTTGAAATGTGCAAACCCGAAAGCACGTATC
AGTGTCAAACTTGTGTCAGAGGTCGGCGTCGGTGTTGTTGCTGCCGGTGTTGCTAAAGGA
AAAGCTGAACATATAGTTGTATCAGGTCATGATGGTGGTACTGGTGCTTCTTCTTGGACT
GGCATAAAATCTGCGGGCTTGCCCTGGGAACTTGGAATTGCTGAAACTCATCAAGTTCTT
GTGCTTAACAATTTAAGATCACGTATAATATTGCAAGCTGATGGTCAAATGAGAACTGGT
TTTGATATTGTTGTTGCTGCACTTTTGGGCGCTGATGAATTTGGTTTCTCAACGGCTCCA
CTTATCGTTATGGGCTGTACAATGATGAGAAAATGTCATTTAAATACTTGCCCTGTTGGT
GTTGCAACTCAAGATCCAATTTTGCGTGAGAAATTTGCAGGCAAACCAGAACATGTCATC
AATTATTTCTTCATGTTGGCTGAGGATATTCGTGAAATAATGGCAAGTTTGGGAATTCGA
AAATTCCAAGATTTAATTGGACGCACCGATTTACTTAAAGTCAATAAAGATCCCAACAAT
GAAAAAGCTCAAACACTTGATCTTCAACTTGTTCTGAAAAATGCTCTTGATTTACGTCCT
AATACAAACATTGTTGGTGGTTCAGTTAAACATGACTTCCAATTAGATAAACGATCAGAT
AATGAAATCATTGAACGTGCTCAGGGCATTTTGAATGGTACAGAAAAGACATTGAATCTC
GATATGACTATTCGTAATGAAGAACGTGCATTTGCTTCTACATTGAGTTATCATATTGCA
TGCAAATTCGGTGAACCAGGACTTCCTGAAGGCACATCTATAAATATCAATTTACGTGGA
TCTGCTGGACAAAGCTTTGGTGCATTCCTTGCACATGGTGTCAATTTGAAATTGGTTGGA
GATGCAAATGATTATGTTGGCAAGAGTTTGAGTGGTGGTACAATTGTCATCACTCCACCT
GAAGATTCACCATTCGAAAGTCATTTGAATGTCATTGTTGGAAATGTTTGTCTTTATGGT
GCCACAAGTGGTAAAGCATTCTTCAGAGGAATTGCAGCTGAACGTTTCTGTGTTAGAAAC
AGTGGTGCAATTGCAGTTGTTGAGGGTGTTGGTGATCACGGTTGTGAATACATGACAGGT
GGAATTTGCCTCATTCTTAGTGGAAACACAGGAAGAAATTTCGCTGCAGGAATGAGTGGT
GGTATTGCTTACGTGTACGATCCTGAAGACATCTTTGTAAGTGGAAAAGCTAACTTGGAA
TCTGTTGAATTGTGTGAATTAGATGAGAAAGCAGATCGCGATTTAGTTCATGGACTTTTG
GAAGAGTTTGTTCAACATACCGGCTCTGTATTAGCAAAAGACATTCTCAATTCTTGGCCA
GGCGTGTGTTCTAAATTTGTCAAAGTATTCCCATACGAATATCAACATGCATTGAAAGTA
TTGGAAGAAGAAAGATTAAAGAAAATTGAAGAAGAAGAGCAAGCTAAAGATGTTGATGTT
GATCATGATCCATATGAGCCAAAAGTAAAAGACATTGAAGAAGCTGTTAAAGACACTGCA
CTTGAAAAACGTAAGATGGAGAAAAATTTGGATAAGGTCCGTGGATTCATCAAATACAAG
CGTGAAACTGGTATTTATCGTGATGCAGCTGAACGTCAAAAAGATTGGGATGAAATTTAC
AACTTTGGTCATGTTCGTAAGAACTTAAAAACTCAAGCTGCACGTTGTATGGAATGCGGT
GTTCCATTTTGTCAGTCGAATGTTACTGGTTGTCCTTTGGGTAACATTATTCCAAAATGG
AATGATTTAGTTTTCCATGATAGATGGAAGGATGCATTGTTGCAACTGTTACAGACAAAC
AACTTCCCCGAATTTACAGGAAGAGTTTGTCCAGCACCTTGCGAAGGTTCATGCGTTTTG
GGAATTTCAGAGCCGGCTGTAACAATTAAAAACATTGAATGTGCAATTATTGATCATGCT
TTCGAGCAGGGATGGATTCAACCACAAAAACCAACTTCTCGTTCAGGAAAGAAGGTTGCA
ATTATTGGAAGTGGGCCATCTGGTCTTGCAGCTGCTCAGCAATTAAATAGAGCGGGTCAT
ACAGTTACTGTCTTTGAAAGAAATGATCGTCCTGGTGGTTTGTTGCAATATGGAATTCCA
ACAATGAAATTGTCAAAAGACGTTGTTATGAGACGAATTGATTTGATGGAAGCTGAAGGA
ATAATTTTCAAATGTAATGTCAATGTCGGTATTGATATCAGTCCAAACGATTTAGTGAGC
GATTATGATGCAGTTCTTATTACAACTGGTGCAACTTCTCCACGTGATTTGCCTATCGCT
AATCGTAATTTGAAAGGTATTTACTTTGCCATGGAATTTTTGGAAGCAAATCAAAAACAA
CAACTTGGAACACGAAAGGACTATATTTCAGCTGAAGGCAAAGATGTGCTTGTCATTGGA
GGCGGTGATACTGGTTGCGATTGTATTGCTACTTCATTAAGACATGGGGCAAAATCAATT
ACCAGTTTTGAAATTCTTCCTGAACCACCTGCAAAACGTGCTGCTGACAATCCATGGCCT
CAATGGCCTAGAATTTTCAGAGTTGATTATGGACATGAGGAAGTTAAAGTCAAATTTGGA
AAAGATCCAAGAGAATATCTCATTACAACTAAAGAATTTTTGGATGATGGAAACGGAAAC
ATTAAAGGTGTCAATACAGTTCGAGTTGAATGGACAAAATCTCCAACAGGTCAATGGCAA
ATGAAAGAAGTTGCTGGTTCTGAAAAATATTATCCAGCTGATTTAGTTCTTCTCGCTATG
GGCTTCTTAGGTCCTGAAAAGAAAGTTCCAGCTGATATTGGTTTGCCACTTGATGGACGT
GGAAATATTCAAACACCAATCGGACAATATGGAACATCGAATCCAAAAGTGTTTGCTGCA
GGCGATTGTCGACGTGGTCAGTCACTTGTTGTTTGGGCTATTACTGAAGGAAGACAGGCA
GCACGTCAAGTTGATTCATTCCTTACAGGATTGCCATCAATTTTGCCAGGCCCAGGAGGT
GTGATCGTTCCACAAAAAGCTACATAA

>g9933.t1 Gene=g9933 Length=2088
MSPPCTNDCNATRPDVMSSDNEIRENVEEKLMDWEAPKKQGLYDPQNEHDACGVGFIVAI
DGRRHHKILRDAQTLAERMYHRGAVACDNDTGDGSGVMTAIPHKLYAKELASQGISLPEF
GKYATGIIYLDKDTHLEAEKDFNTLAASLGINVIAWRTVPTDSSAIGAVARKSEPLSRQV
FVTADLDEEALKKKVFVLRKRATHELVKPGRRFYIKSLSTLTIVYKGLFNSDQLWLYYTD
LLNPDFDTYLALVHTRFSTNTFPAWERAHPMRVLAHNGEINTLRGNVNLMKAREGVMKSD
EFGDELKKLFPVVEPNLSDSGSADCVLEFLTMAGKRSLPEAVMTMVPEAWHNDKTMSQEK
RDFYRWAACVMEPWDGPALISFTDGRYIGAVLDRNGLRPSRFYVTRDNILVMASEVGVYD
VEPKDVLLKSRLKPGRMLLVDTKEKALIQDVELKSKIAKLRPHGEWLQQQVFLQDIRRED
ALKHGALSAVRSAGDLKRFTRGLFDPRLTLYGYTTETIHMLLIPMIKNKKEALGSMGNDS
PLACLSKFQPLPYEYFKQLFAQVTNPPIDPFREKIVMTVQCPIGPEYNILEPSAQQVHRL
WLNNPILSVADIQMLKRSTHRGWKTCVIDITFDFRDGIQGYIETFDRICREAQRAAETDH
QLIIISDRAGGPQFCPISSLLALGCIHHHLIETRLRMKVGLIVETAEAREVHHICVLLGY
GADAINPYLVFELAKTLRDQCVIDPALSDEEISSSFGKAIDVGMAKVMAKMGISTLQSYK
AAQIFEAVGLSEEVIDLCFKGTQSRIGGVGMNILAREGLERHQLSFHNLSPDAQILRNPG
NFHWRQGGEGHINEPGAIGALQEATVNENKNSYKQFREITMDSVKKCCLRGQLDFVTDRE
KIDISEVEPASEIVKRFATGAMSFGSISLEAHTTLAIAMNRIGGKSNTGEGGENADRYLN
QDPHTNKRSAIKQVASGRFGVTAAYIANSDDLQIKMAQGAKPGEGGELPGYKVTKAIAKT
RHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPKARISVKLVSEVGVGVVAAGVAKG
KAEHIVVSGHDGGTGASSWTGIKSAGLPWELGIAETHQVLVLNNLRSRIILQADGQMRTG
FDIVVAALLGADEFGFSTAPLIVMGCTMMRKCHLNTCPVGVATQDPILREKFAGKPEHVI
NYFFMLAEDIREIMASLGIRKFQDLIGRTDLLKVNKDPNNEKAQTLDLQLVLKNALDLRP
NTNIVGGSVKHDFQLDKRSDNEIIERAQGILNGTEKTLNLDMTIRNEERAFASTLSYHIA
CKFGEPGLPEGTSININLRGSAGQSFGAFLAHGVNLKLVGDANDYVGKSLSGGTIVITPP
EDSPFESHLNVIVGNVCLYGATSGKAFFRGIAAERFCVRNSGAIAVVEGVGDHGCEYMTG
GICLILSGNTGRNFAAGMSGGIAYVYDPEDIFVSGKANLESVELCELDEKADRDLVHGLL
EEFVQHTGSVLAKDILNSWPGVCSKFVKVFPYEYQHALKVLEEERLKKIEEEEQAKDVDV
DHDPYEPKVKDIEEAVKDTALEKRKMEKNLDKVRGFIKYKRETGIYRDAAERQKDWDEIY
NFGHVRKNLKTQAARCMECGVPFCQSNVTGCPLGNIIPKWNDLVFHDRWKDALLQLLQTN
NFPEFTGRVCPAPCEGSCVLGISEPAVTIKNIECAIIDHAFEQGWIQPQKPTSRSGKKVA
IIGSGPSGLAAAQQLNRAGHTVTVFERNDRPGGLLQYGIPTMKLSKDVVMRRIDLMEAEG
IIFKCNVNVGIDISPNDLVSDYDAVLITTGATSPRDLPIANRNLKGIYFAMEFLEANQKQ
QLGTRKDYISAEGKDVLVIGGGDTGCDCIATSLRHGAKSITSFEILPEPPAKRAADNPWP
QWPRIFRVDYGHEEVKVKFGKDPREYLITTKEFLDDGNGNIKGVNTVRVEWTKSPTGQWQ
MKEVAGSEKYYPADLVLLAMGFLGPEKKVPADIGLPLDGRGNIQTPIGQYGTSNPKVFAA
GDCRRGQSLVVWAITEGRQAARQVDSFLTGLPSILPGPGGVIVPQKAT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
29 g9933.t1 CDD cd00713 GltS 52 461 0.0
30 g9933.t1 CDD cd02808 GltS_FMN 869 1234 4.67086E-158
28 g9933.t1 CDD cd00982 gltB_C 1280 1531 1.08706E-135
26 g9933.t1 Coils Coil Coil 1538 1558 -
25 g9933.t1 Coils Coil Coil 1569 1589 -
18 g9933.t1 Gene3D G3DSA:3.60.20.10 Glutamine Phosphoribosylpyrophosphate 52 476 5.7E-180
23 g9933.t1 Gene3D G3DSA:3.20.20.70 Aldolase class I 486 837 4.2E-133
22 g9933.t1 Gene3D G3DSA:3.20.20.70 Aldolase class I 838 1267 1.5E-202
24 g9933.t1 Gene3D G3DSA:2.160.20.60 - 1274 1551 2.6E-104
19 g9933.t1 Gene3D G3DSA:1.10.1060.10 - 1576 1736 2.6E-20
21 g9933.t1 Gene3D G3DSA:3.50.50.60 - 1737 1873 1.4E-34
20 g9933.t1 Gene3D G3DSA:3.50.50.60 - 1874 2071 7.2E-13
7 g9933.t1 PANTHER PTHR11938 FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 28 2070 0.0
8 g9933.t1 PANTHER PTHR11938:SF133 GLUTAMATE SYNTHASE [NADH] 28 2070 0.0
27 g9933.t1 PIRSF PIRSF000187 GOGAT 5 2088 0.0
10 g9933.t1 PRINTS PR00419 Adrenodoxin reductase family signature 1738 1760 8.8E-22
9 g9933.t1 PRINTS PR00419 Adrenodoxin reductase family signature 1761 1774 8.8E-22
12 g9933.t1 PRINTS PR00419 Adrenodoxin reductase family signature 1803 1813 8.8E-22
11 g9933.t1 PRINTS PR00419 Adrenodoxin reductase family signature 1876 1890 8.8E-22
6 g9933.t1 Pfam PF00310 Glutamine amidotransferases class-II 52 466 4.0E-173
2 g9933.t1 Pfam PF04898 Glutamate synthase central domain 508 791 1.3E-104
3 g9933.t1 Pfam PF01645 Conserved region in glutamate synthase 852 1220 9.1E-152
5 g9933.t1 Pfam PF01493 GXGXG motif 1302 1492 6.9E-75
4 g9933.t1 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 1613 1724 6.4E-20
1 g9933.t1 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1737 2057 1.0E-22
32 g9933.t1 ProSiteProfiles PS51278 Glutamine amidotransferase type 2 domain profile. 52 443 21.751
16 g9933.t1 SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 52 469 8.11E-138
15 g9933.t1 SUPERFAMILY SSF51395 FMN-linked oxidoreductases 506 1248 5.7E-246
13 g9933.t1 SUPERFAMILY SSF69336 Alpha subunit of glutamate synthase, C-terminal domain 1271 1540 3.53E-83
17 g9933.t1 SUPERFAMILY SSF46548 alpha-helical ferredoxin 1591 1746 1.67E-34
14 g9933.t1 SUPERFAMILY SSF51971 Nucleotide-binding domain 1736 2002 2.0E-65
31 g9933.t1 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 1592 2076 8.9E-221

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005506 iron ion binding MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0006537 glutamate biosynthetic process BP
GO:0003824 catalytic activity MF
GO:0055114 NA NA
GO:0051536 iron-sulfur cluster binding MF
GO:0016639 oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor MF
GO:0016040 glutamate synthase (NADH) activity MF
GO:0006807 nitrogen compound metabolic process BP
GO:0015930 glutamate synthase activity MF
GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors MF
GO:0010181 FMN binding MF
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values