General information for g9934.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Calcyclin-binding protein.
Parent gene
- The parent gene g9934 is located on chr_1: 6089016..6089742 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9934 | g9934.t1 | TSS | g9934.t1 | 6088889 | 6088889 |
| chr_1 | g9934 | g9934.t1 | isoform | g9934.t1 | 6088943 | 6089742 |
| chr_1 | g9934 | g9934.t1 | exon | g9934.t1.exon1 | 6088943 | 6088951 |
| chr_1 | g9934 | g9934.t1 | cds | g9934.t1.CDS1 | 6088943 | 6088951 |
| chr_1 | g9934 | g9934.t1 | exon | g9934.t1.exon2 | 6089020 | 6089217 |
| chr_1 | g9934 | g9934.t1 | cds | g9934.t1.CDS2 | 6089020 | 6089217 |
| chr_1 | g9934 | g9934.t1 | exon | g9934.t1.exon3 | 6089272 | 6089742 |
| chr_1 | g9934 | g9934.t1 | cds | g9934.t1.CDS3 | 6089272 | 6089742 |
| chr_1 | g9934 | g9934.t1 | TTS | g9934.t1 | 6089790 | 6089790 |
Sequences
>g9934.t1 Gene=g9934 Length=678
ATGGAAAAGCTAAGCGAATTAAACTCGGCAAAAGTGGAAATTATTAGTATTCTAGATTCG
GCAAAATCTCAACGAGTAAAAAATCTTTTACAAAATGAACTCATTAAAATCAATGATGAG
ATTGCACAGCGACAGAAAGAAGATGAAACAAAAATGAATGTAGATGAACCTATAAAAGTT
TCTACTAAAGTTATAGTAGATATTAAGGAACATGCATTTGATGAATCAGAGAAATTTGTA
AAGATATTCATTCCATTCAACGTTACAGATGTAAAAGAGGAAGATGTTGAATTAAATACA
ACCGAAGATTCTTTCTCTTTAATTATTCATGGAGCACAAAAGGATTATCGTTTTATCGTC
ACATCTCTTCTTAAGAAAATTAATACTGCCAAGAGTTATCGAAAAGTCAAGTCTGATATG
ATTTCCATATATTTAAAGAAGGTTAAAGAGGGTGAAACATGGACGTGTCTCACTAAAACA
GAAAAGTATTTGAAAGATCAAAAAACAAAGATGTTTGATAAGAATGACGATGATGCAAAA
GACGATCCTTCATCTATGTTGATGAATATGATGAAAAAAATGTATGAAACAGGTGATCCT
GAAATGAAACGAACAATTGCAAAGGCATGGACTGAAGGTCAGAATAAGCAAATGGAAAAT
CCTCTTGGTCCTATGTAA
>g9934.t1 Gene=g9934 Length=225
MEKLSELNSAKVEIISILDSAKSQRVKNLLQNELIKINDEIAQRQKEDETKMNVDEPIKV
STKVIVDIKEHAFDESEKFVKIFIPFNVTDVKEEDVELNTTEDSFSLIIHGAQKDYRFIV
TSLLKKINTAKSYRKVKSDMISIYLKKVKEGETWTCLTKTEKYLKDQKTKMFDKNDDDAK
DDPSSMLMNMMKKMYETGDPEMKRTIAKAWTEGQNKQMENPLGPM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g9934.t1 | Coils | Coil | Coil | 27 | 47 | - |
| 5 | g9934.t1 | Gene3D | G3DSA:2.60.40.790 | - | 65 | 167 | 5.1E-22 |
| 2 | g9934.t1 | PANTHER | PTHR13164:SF3 | CALCYCLIN-BINDING PROTEIN | 1 | 220 | 8.7E-52 |
| 3 | g9934.t1 | PANTHER | PTHR13164 | CALICYLIN BINDING PROTEIN | 1 | 220 | 8.7E-52 |
| 1 | g9934.t1 | Pfam | PF04969 | CS domain | 70 | 147 | 3.3E-11 |
| 8 | g9934.t1 | ProSiteProfiles | PS51203 | CS domain profile. | 66 | 158 | 13.694 |
| 7 | g9934.t1 | ProSiteProfiles | PS51048 | SGS domain profile. | 142 | 225 | 14.174 |
| 4 | g9934.t1 | SUPERFAMILY | SSF49764 | HSP20-like chaperones | 70 | 213 | 3.84E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K04507 (calcyclin binding protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
