General information for g9934.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Calcyclin-binding protein.
Parent gene
- The parent gene g9934 is located on chr_1: 6089016..6089742 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9934 | g9934.t4 | TSS | g9934.t4 | 6088889 | 6088889 |
| chr_1 | g9934 | g9934.t4 | isoform | g9934.t4 | 6088943 | 6089742 |
| chr_1 | g9934 | g9934.t4 | exon | g9934.t4.exon1 | 6088943 | 6088968 |
| chr_1 | g9934 | g9934.t4 | cds | g9934.t4.CDS1 | 6088968 | 6088968 |
| chr_1 | g9934 | g9934.t4 | exon | g9934.t4.exon2 | 6089045 | 6089217 |
| chr_1 | g9934 | g9934.t4 | cds | g9934.t4.CDS2 | 6089045 | 6089217 |
| chr_1 | g9934 | g9934.t4 | exon | g9934.t4.exon3 | 6089272 | 6089742 |
| chr_1 | g9934 | g9934.t4 | cds | g9934.t4.CDS3 | 6089272 | 6089742 |
| chr_1 | g9934 | g9934.t4 | TTS | g9934.t4 | 6089790 | 6089790 |
Sequences
>g9934.t4 Gene=g9934 Length=670
ATGGAAAAGGTGAGTGATTGTAATAATGGAAATTATTAGTATTCTAGATTCGGCAAAATC
TCAACGAGTAAAAAATCTTTTACAAAATGAACTCATTAAAATCAATGATGAGATTGCACA
GCGACAGAAAGAAGATGAAACAAAAATGAATGTAGATGAACCTATAAAAGTTTCTACTAA
AGTTATAGTAGATATTAAGGAACATGCATTTGATGAATCAGAGAAATTTGTAAAGATATT
CATTCCATTCAACGTTACAGATGTAAAAGAGGAAGATGTTGAATTAAATACAACCGAAGA
TTCTTTCTCTTTAATTATTCATGGAGCACAAAAGGATTATCGTTTTATCGTCACATCTCT
TCTTAAGAAAATTAATACTGCCAAGAGTTATCGAAAAGTCAAGTCTGATATGATTTCCAT
ATATTTAAAGAAGGTTAAAGAGGGTGAAACATGGACGTGTCTCACTAAAACAGAAAAGTA
TTTGAAAGATCAAAAAACAAAGATGTTTGATAAGAATGACGATGATGCAAAAGACGATCC
TTCATCTATGTTGATGAATATGATGAAAAAAATGTATGAAACAGGTGATCCTGAAATGAA
ACGAACAATTGCAAAGGCATGGACTGAAGGTCAGAATAAGCAAATGGAAAATCCTCTTGG
TCCTATGTAA
>g9934.t4 Gene=g9934 Length=214
MEIISILDSAKSQRVKNLLQNELIKINDEIAQRQKEDETKMNVDEPIKVSTKVIVDIKEH
AFDESEKFVKIFIPFNVTDVKEEDVELNTTEDSFSLIIHGAQKDYRFIVTSLLKKINTAK
SYRKVKSDMISIYLKKVKEGETWTCLTKTEKYLKDQKTKMFDKNDDDAKDDPSSMLMNMM
KKMYETGDPEMKRTIAKAWTEGQNKQMENPLGPM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9934.t4 | Coils | Coil | Coil | 16 | 36 | - |
| 6 | g9934.t4 | Gene3D | G3DSA:2.60.40.790 | - | 54 | 156 | 4.5E-22 |
| 3 | g9934.t4 | PANTHER | PTHR13164:SF3 | CALCYCLIN-BINDING PROTEIN | 2 | 209 | 1.2E-50 |
| 4 | g9934.t4 | PANTHER | PTHR13164 | CALICYLIN BINDING PROTEIN | 2 | 209 | 1.2E-50 |
| 2 | g9934.t4 | Pfam | PF09032 | Siah interacting protein, N terminal | 3 | 46 | 3.8E-5 |
| 1 | g9934.t4 | Pfam | PF04969 | CS domain | 59 | 136 | 3.0E-11 |
| 9 | g9934.t4 | ProSiteProfiles | PS51203 | CS domain profile. | 55 | 147 | 13.694 |
| 8 | g9934.t4 | ProSiteProfiles | PS51048 | SGS domain profile. | 131 | 214 | 14.174 |
| 5 | g9934.t4 | SUPERFAMILY | SSF49764 | HSP20-like chaperones | 59 | 202 | 3.31E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K04507 (calcyclin binding protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed