General information for g9940.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Transitional endoplasmic reticulum ATPase TER94.
Parent gene
- The parent gene g9940 is located on chr_1: 6119674..6120493 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9940 | g9940.t8 | isoform | g9940.t8 | 6117230 | 6120493 |
| chr_1 | g9940 | g9940.t8 | exon | g9940.t8.exon1 | 6117230 | 6117483 |
| chr_1 | g9940 | g9940.t8 | exon | g9940.t8.exon2 | 6117608 | 6117665 |
| chr_1 | g9940 | g9940.t8 | exon | g9940.t8.exon3 | 6117775 | 6118138 |
| chr_1 | g9940 | g9940.t8 | exon | g9940.t8.exon4 | 6118209 | 6118401 |
| chr_1 | g9940 | g9940.t8 | cds | g9940.t8.CDS1 | 6118297 | 6118401 |
| chr_1 | g9940 | g9940.t8 | exon | g9940.t8.exon5 | 6118480 | 6118645 |
| chr_1 | g9940 | g9940.t8 | cds | g9940.t8.CDS2 | 6118480 | 6118645 |
| chr_1 | g9940 | g9940.t8 | exon | g9940.t8.exon6 | 6118705 | 6120003 |
| chr_1 | g9940 | g9940.t8 | cds | g9940.t8.CDS3 | 6118705 | 6120003 |
| chr_1 | g9940 | g9940.t8 | exon | g9940.t8.exon7 | 6120063 | 6120187 |
| chr_1 | g9940 | g9940.t8 | cds | g9940.t8.CDS4 | 6120063 | 6120187 |
| chr_1 | g9940 | g9940.t8 | exon | g9940.t8.exon8 | 6120251 | 6120493 |
| chr_1 | g9940 | g9940.t8 | cds | g9940.t8.CDS5 | 6120251 | 6120493 |
| chr_1 | g9940 | g9940.t8 | TTS | g9940.t8 | 6120807 | 6120807 |
| chr_1 | g9940 | g9940.t8 | TSS | g9940.t8 | NA | NA |
Sequences
>g9940.t8 Gene=g9940 Length=2702
AATTTATCGGTTAAAAAAATTCAAAAATTCGCAGTCCCCTATTTTCGCATCTTCTATAAG
TTTTTTGTGCCGCTGCTTCATAAAGAAATTTACGATTCTACAATCGATAAAAATTTTTAA
ATAAAAAGTGCTTGAGTTGTTTGCTAATCATTAAAACAAGATAAATCTGTGAAGAAACAT
TGGTTTCATTGAGAAAAACTAAATTGAATCTTTTACTGATAGTGATAAAGGATAAAAATA
AAAGAAAAACATTGGTTTTTGAATACATATATTACTGATTGATTCAACTAACAATATGGC
TGATCCAAAACAAGGAGATGATTTAGCTACAGCAATTTTAAAGCAAAAGTCTAAACCTAA
TCGTTTGATGGTCGATGATGCTACAAATGATGATAACTCAATTGTTTGTCTATCGCAAGC
AAAAATGGACGAGTTGCAATTGTTTCGCGGAGATACAGTTTTGTTAAAGGGGAAAAGAAG
AAAGGAGACTGTTTGTATTGTTTTATCTGACGATACATGTCCTAATGAGAAAATTCGTAT
GAATCGTGTTGTTCGTAACAATTTGCGTGTTCGACTCTCGGATATTGTCGCCATTCAATC
ATGTCCTGATGTTAAATATGGCAAACGTGTTCATATTTTGCCAATTGATGACACTGTCGA
AGGTCTGACTGGGTTACAATATCTTTGATGTTTATTTGAAACCATACTTCCTCGAAGCTT
ATCGTCCTATTCATAAAGACGATACTTTTATTGTTCGTGGTGGCATGAGAGCTGTTGAAT
TTAAAGTTGTTGGAACAGATCCTGAACCATATTGTATAGTTGCTCCCGATACTGTAATTC
ATTGTGAAGGAGATCCGATTAAACGTGAAGAAGAAGAAGAAGCGTTGAATGCTGTCGGTT
ATGATGATATTGGTGGTTGTCGAAAGCAATTGGCTCAAATTAAAGAAATGGTCGAGTTAC
CATTGCGTCATCCATCACTTTTCAAAGCAATTGGTGTTAAACCTCCACGAGGTATTTTGT
TGTATGGACCACCAGGTACTGGAAAAACTTTAATTGCAAGAGCTGTAGCAAATGAGACTG
GCGCTTTCTTCTTCTTAATTAATGGTCCTGAGATTATGTCTAAATTAGCTGGTGAATCAG
AATCAAATTTGCGTAAAGCATTCGAAGAAGCAGATAAGAATTCACCTGCAATTATATTTA
TTGATGAATTGGATGCAATTGCTCCTAAGCGTGAAAAAACTCATGGTGAAGTTGAACGCA
GAATTGTCTCTCAATTATTGACTCTCATGGACGGTATGAAGAAAAGCTCTCACGTTATCG
TTATTGCTGCAACAAATCGTCCAAATAGTATCGATCCAGCTCTTCGTCGATTCGGTCGCT
TTGATCGTGAAATTGATATTGGCATTCCAGACGCAACTGGCCGTTTAGAGGTGTTGCGTA
TTCACACTAAAAATATGAAATTAGGCGAAGATGTTGATCTTGAACAAATTGCTGCTGAAT
CGCATGGTCATGTTGGCGCTGATTTGGCTTCATTGTGCTCAGAAGCTGCACTTCAACAAA
TTCGTGAGAAAATGGATTTGATTGATTTGGAAGACGATCAAATTGATGCCGACGTTTTAA
ATTCATTGGCTGTTTCTATGGATAATTTCCGTTATGCTATGACCAAATCAAGTCCATCAG
CTTTGCGTGAAACAGTCGTGGAAACTCCAACAACTACATGGGCCGATATTGGTGGTTTAG
AAAATGTCAAGCGTGAATTACAAGAATTGGTTCAATATCCAGTTGAGCATCCAGATAAAT
TTTTGAAATTTGGTATGCAACCATCACGCGGTGTTCTTTTCTATGGTCCACCCGGTTGTG
GTAAAACTTTGCTCGCTAAAGCAATTGCTAATGAATGTCAGGCTAACTTTATCTCAGTCA
AGGGTCCTGAACTTTTAACTATGTGGTTCGGTGAATCAGAAGCAAATGTTAGAGACATTT
TTGATAAAGCTCGTTCTGCTGCACCATGTGTTTTGTTCTTTGATGAATTGGACAGTATTG
CTAAATCTCGCGGAGGCAATGTCGGTGATGCAGGTGGAGCTGCTGACAGAGTTATTAATC
AAATTTTGACTGAAATGGATGGTATGGGAGCCAAGAAAAATGTCTTCATTATTGGTGCAA
CAAATCGTCCTGACATCATCGATAGCGCTATTCTTCGTCCTGGTCGTCTAGATCAGTTGA
TTTATATTCCATTGCCCGATGAAAAATCACGCATTGCTATTTTGCAATCTAACTTGCGCA
AGAGTCCAGTCGGTAAAGAAGTCGACTTGGGATATATTGCAAAAGTCACAAATGGTTTCT
CAGGTGCAGATCTTACAGAAATTTGCCAACGTGCTTGCAAACTTGCAATTCGTCAAGCAA
TCGAAACTGAAATTCGTCGTGAAAAAGCACGAAGTGATAATCAGAATGTTGCAATGGATA
TGGACGATGATGATCCAGTTCCAGAAATTACACGAGCTCACTTTGAGGAAGCAATGAAAT
TTGCTCGCCGATCCGTATCAGATAATGACATTCGTAAATATGAAATGTTTGCTCAAACTC
TGCAGCAATCGCGAGGATTTGGCAACTCATTCAGATTTCCAGCGGGTTCTGCTGGTTCAC
AAAATCCAGATCAGCAAAATCAACCGAGTAATAACGATCCTGATGATGATCTTTACAGTT
AA
>g9940.t8 Gene=g9940 Length=645
MRAVEFKVVGTDPEPYCIVAPDTVIHCEGDPIKREEEEEALNAVGYDDIGGCRKQLAQIK
EMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK
LAGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKK
SSHVIVIAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMKLGEDVDLE
QIAAESHGHVGADLASLCSEAALQQIREKMDLIDLEDDQIDADVLNSLAVSMDNFRYAMT
KSSPSALRETVVETPTTTWADIGGLENVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFY
GPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCVLFFD
ELDSIAKSRGGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDSAILRPG
RLDQLIYIPLPDEKSRIAILQSNLRKSPVGKEVDLGYIAKVTNGFSGADLTEICQRACKL
AIRQAIETEIRREKARSDNQNVAMDMDDDDPVPEITRAHFEEAMKFARRSVSDNDIRKYE
MFAQTLQQSRGFGNSFRFPAGSAGSQNPDQQNQPSNNDPDDDLYS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g9940.t8 | CDD | cd00009 | AAA | 50 | 213 | 8.03157E-31 |
| 17 | g9940.t8 | CDD | cd00009 | AAA | 323 | 490 | 1.79238E-30 |
| 13 | g9940.t8 | Gene3D | G3DSA:3.10.330.10 | - | 1 | 47 | 3.9E-20 |
| 11 | g9940.t8 | Gene3D | G3DSA:3.40.50.300 | - | 48 | 213 | 7.3E-66 |
| 15 | g9940.t8 | Gene3D | G3DSA:1.10.8.60 | - | 215 | 310 | 6.4E-32 |
| 12 | g9940.t8 | Gene3D | G3DSA:3.40.50.300 | - | 311 | 491 | 4.7E-72 |
| 14 | g9940.t8 | Gene3D | G3DSA:1.10.8.60 | - | 492 | 607 | 1.9E-44 |
| 22 | g9940.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 645 | - |
| 6 | g9940.t8 | PANTHER | PTHR23077:SF69 | TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE | 2 | 624 | 0.0 |
| 7 | g9940.t8 | PANTHER | PTHR23077 | AAA-FAMILY ATPASE | 2 | 624 | 0.0 |
| 3 | g9940.t8 | Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 84 | 213 | 3.4E-48 |
| 4 | g9940.t8 | Pfam | PF17862 | AAA+ lid domain | 236 | 277 | 9.1E-12 |
| 2 | g9940.t8 | Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 357 | 490 | 1.6E-45 |
| 5 | g9940.t8 | Pfam | PF17862 | AAA+ lid domain | 513 | 553 | 8.2E-11 |
| 1 | g9940.t8 | Pfam | PF09336 | Vps4 C terminal oligomerisation domain | 569 | 604 | 4.7E-6 |
| 19 | g9940.t8 | ProSitePatterns | PS00674 | AAA-protein family signature. | 184 | 202 | - |
| 18 | g9940.t8 | ProSitePatterns | PS00674 | AAA-protein family signature. | 460 | 478 | - |
| 21 | g9940.t8 | SMART | SM00382 | AAA_5 | 80 | 216 | 8.2E-24 |
| 20 | g9940.t8 | SMART | SM00382 | AAA_5 | 353 | 492 | 3.9E-24 |
| 10 | g9940.t8 | SUPERFAMILY | SSF54585 | Cdc48 domain 2-like | 1 | 40 | 2.55E-12 |
| 8 | g9940.t8 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 45 | 285 | 3.79E-65 |
| 9 | g9940.t8 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 315 | 605 | 3.46E-75 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
- This transcript has been annotated with K13525 (transitional endoplasmic reticulum ATPase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
