General information for g9952.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Soma ferritin.
Parent gene
- The parent gene g9952 is located on chr_1: 6175937..6176471 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9952 | g9952.t2 | TSS | g9952.t2 | 6175762 | 6175762 |
| chr_1 | g9952 | g9952.t2 | isoform | g9952.t2 | 6175832 | 6176471 |
| chr_1 | g9952 | g9952.t2 | exon | g9952.t2.exon1 | 6175832 | 6176218 |
| chr_1 | g9952 | g9952.t2 | cds | g9952.t2.CDS1 | 6175973 | 6176218 |
| chr_1 | g9952 | g9952.t2 | exon | g9952.t2.exon2 | 6176277 | 6176471 |
| chr_1 | g9952 | g9952.t2 | cds | g9952.t2.CDS2 | 6176277 | 6176471 |
| chr_1 | g9952 | g9952.t2 | TTS | g9952.t2 | 6176695 | 6176695 |
Sequences
>g9952.t2 Gene=g9952 Length=582
ATGGCAAGTTATGCTCGTCAAAATTTTCATAATGAGTGTGAAGCCGCTATTAATCGCCAG
ATAAATATGGAATTGTATGCATCTTACGTCTATCTTTCTATGGTAAGTGTCAAATGTTTT
TGAAATTTTTATTTATTTACAATGGAAAATTCTTTAATACAGGCGTATTTTTTTGATCGT
GATGATGTCGCACTTTCCGGTATGCATTGGTATTTCAAACAATGTTCAGATGAAGAACGT
GAACATGCGATGAAACTGATGAAGTATCTCAATAAACGTGGAGGACGCATCGTATTGCAA
GACATAAAAAATCCAGACACAGCTTTTGAATATACAGCAGTTGAAGCTATGGAGAAGGCT
TTACAATTAGAAAAAGATGTTAATCAGTCGCTTTTGGATGTTCATTCTATTGCAACTAGT
CACAATGATGTAAATTTCTGTGACTTTCTCGAAAGTGAATTTCTGAAAGAGCAAGTTGAT
GCAATCAAAGAAATTTCAGAGCACGTTACTAATCTCAAAAGATGTGGAGAAGGACTTGGT
GTTTATATGTTTGATAAACATTTAAACAAGCATAAAGACTAA
>g9952.t2 Gene=g9952 Length=146
MENSLIQAYFFDRDDVALSGMHWYFKQCSDEEREHAMKLMKYLNKRGGRIVLQDIKNPDT
AFEYTAVEAMEKALQLEKDVNQSLLDVHSIATSHNDVNFCDFLESEFLKEQVDAIKEISE
HVTNLKRCGEGLGVYMFDKHLNKHKD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g9952.t2 | CDD | cd01056 | Euk_Ferritin | 8 | 140 | 4.15467E-64 |
| 6 | g9952.t2 | Gene3D | G3DSA:1.20.1260.10 | - | 4 | 145 | 1.6E-61 |
| 2 | g9952.t2 | PANTHER | PTHR11431 | FERRITIN | 8 | 143 | 4.6E-54 |
| 3 | g9952.t2 | PANTHER | PTHR11431:SF75 | FERRITIN | 8 | 143 | 4.6E-54 |
| 1 | g9952.t2 | Pfam | PF00210 | Ferritin-like domain | 14 | 127 | 1.4E-27 |
| 5 | g9952.t2 | ProSitePatterns | PS00204 | Ferritin iron-binding regions signature 2. | 96 | 116 | - |
| 7 | g9952.t2 | ProSiteProfiles | PS50905 | Ferritin-like diiron domain profile. | 1 | 129 | 33.879 |
| 4 | g9952.t2 | SUPERFAMILY | SSF47240 | Ferritin-like | 6 | 144 | 5.5E-53 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006879 | cellular iron ion homeostasis | BP |
| GO:0006826 | iron ion transport | BP |
| GO:0008199 | ferric iron binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
