Gene loci information

Transcript annotation

  • This transcript has been annotated as Aldehyde dehydrogenase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9968 g9968.t3 TSS g9968.t3 6291027 6291027
chr_1 g9968 g9968.t3 isoform g9968.t3 6291223 6292616
chr_1 g9968 g9968.t3 exon g9968.t3.exon1 6291223 6291318
chr_1 g9968 g9968.t3 cds g9968.t3.CDS1 6291223 6291318
chr_1 g9968 g9968.t3 exon g9968.t3.exon2 6291523 6291768
chr_1 g9968 g9968.t3 cds g9968.t3.CDS2 6291523 6291768
chr_1 g9968 g9968.t3 exon g9968.t3.exon3 6291825 6291915
chr_1 g9968 g9968.t3 cds g9968.t3.CDS3 6291825 6291915
chr_1 g9968 g9968.t3 exon g9968.t3.exon4 6291980 6292053
chr_1 g9968 g9968.t3 cds g9968.t3.CDS4 6291980 6292053
chr_1 g9968 g9968.t3 exon g9968.t3.exon5 6292111 6292186
chr_1 g9968 g9968.t3 cds g9968.t3.CDS5 6292111 6292186
chr_1 g9968 g9968.t3 exon g9968.t3.exon6 6292241 6292325
chr_1 g9968 g9968.t3 cds g9968.t3.CDS6 6292241 6292325
chr_1 g9968 g9968.t3 exon g9968.t3.exon7 6292384 6292406
chr_1 g9968 g9968.t3 cds g9968.t3.CDS7 6292384 6292406
chr_1 g9968 g9968.t3 exon g9968.t3.exon8 6292470 6292616
chr_1 g9968 g9968.t3 cds g9968.t3.CDS8 6292470 6292615
chr_1 g9968 g9968.t3 TTS g9968.t3 6293623 6293623

Sequences

>g9968.t3 Gene=g9968 Length=838
ATGTTAAGAACAACAGTTCGTTCATTTATTAAAATTCATCAAAGATTTTATTCAATTCCT
GCAGCTCAAACGAATCCAGAGATACTTTATAGTGGAATTTTCATAAATAATGAATGGCAT
AAATCGGAATCGGGCAAGACTTTTAAAACAATTGATCCAACAACTGAAAATGTTATTGCT
GAAATTCAAGAATCATCAAAAGTTGATGTTGATAAGGCAGTAGCTGCTGCAAAGAGTGCT
TTTAAATTGGGTTCACCATGGAGACGTATGGATGCTAGTGAACGAGGTAATTTGCTTTTT
AAACTTGCTGACTTGATGGAGAGAGATCGCGTTTATCTTGCTAGTTTAGAAACTCTTGAT
AATGGCAAACCTTATGCAATGAGTTACAATGTTGACCTACCAATGGCAATCAAAAATCTT
CGTTATTATGCCGGTTGGGCAGATAAGAACCATGGAAAAGTTATTCCAATGGATGGAGAG
TTCTTTGCTTATACTCGACATGAACCAGTTGGTGTATGTGGGCAGATTATACCATGGAAT
TTTCCTATTTTGATGGCTGCATGGAAATTGGGACCAGCACTCGCTACCGGAAACACTATC
GTTTTGAAACCGGCTGAACAAACACCACTTACTGCTTTATACATTGCTCAATTGAGTCGT
GAAGCAGGATTTCCAGATGGAGTCATTAATGTCGTTCCGGGTTTCGGTGAAACTGGACAA
CATTTAGTAAATCATAATGATATTGATAAGATTGCTTTTACTGGTAGTACAGAAGTTGGA
AAATTAATCAAGGCTGGTGCAGCAAACACACTGAAGAGAACAACACTCGAACTTGGAG

>g9968.t3 Gene=g9968 Length=279
MLRTTVRSFIKIHQRFYSIPAAQTNPEILYSGIFINNEWHKSESGKTFKTIDPTTENVIA
EIQESSKVDVDKAVAAAKSAFKLGSPWRRMDASERGNLLFKLADLMERDRVYLASLETLD
NGKPYAMSYNVDLPMAIKNLRYYAGWADKNHGKVIPMDGEFFAYTRHEPVGVCGQIIPWN
FPILMAAWKLGPALATGNTIVLKPAEQTPLTALYIAQLSREAGFPDGVINVVPGFGETGQ
HLVNHNDIDKIAFTGSTEVGKLIKAGAANTLKRTTLELG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g9968.t3 Gene3D G3DSA:3.40.605.10 Aldehyde Dehydrogenase; Chain A 13 279 0
2 g9968.t3 PANTHER PTHR11699:SF274 DEHYDROGENASE, PUTATIVE-RELATED 19 279 0
3 g9968.t3 PANTHER PTHR11699 ALDEHYDE DEHYDROGENASE-RELATED 19 279 0
1 g9968.t3 Pfam PF00171 Aldehyde dehydrogenase family 39 279 0
4 g9968.t3 SUPERFAMILY SSF53720 ALDH-like 23 279 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed