Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Aldehyde dehydrogenase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9968 g9968.t4 TSS g9968.t4 6291027 6291027
chr_1 g9968 g9968.t4 isoform g9968.t4 6291223 6293047
chr_1 g9968 g9968.t4 exon g9968.t4.exon1 6291223 6291318
chr_1 g9968 g9968.t4 cds g9968.t4.CDS1 6291223 6291318
chr_1 g9968 g9968.t4 exon g9968.t4.exon2 6291523 6291854
chr_1 g9968 g9968.t4 cds g9968.t4.CDS2 6291523 6291801
chr_1 g9968 g9968.t4 exon g9968.t4.exon3 6292111 6292186
chr_1 g9968 g9968.t4 exon g9968.t4.exon4 6292241 6292379
chr_1 g9968 g9968.t4 exon g9968.t4.exon5 6292506 6292616
chr_1 g9968 g9968.t4 exon g9968.t4.exon6 6292695 6292720
chr_1 g9968 g9968.t4 exon g9968.t4.exon7 6292780 6293047
chr_1 g9968 g9968.t4 TTS g9968.t4 6293623 6293623

Sequences

>g9968.t4 Gene=g9968 Length=1048
ATGTTAAGAACAACAGTTCGTTCATTTATTAAAATTCATCAAAGATTTTATTCAATTCCT
GCAGCTCAAACGAATCCAGAGATACTTTATAGTGGAATTTTCATAAATAATGAATGGCAT
AAATCGGAATCGGGCAAGACTTTTAAAACAATTGATCCAACAACTGAAAATGTTATTGCT
GAAATTCAAGAATCATCAAAAGTTGATGTTGATAAGGCAGTAGCTGCTGCAAAGAGTGCT
TTTAAATTGGGTTCACCATGGAGACGTATGGATGCTAGTGAACGAGGTAATTTGCTTTTT
AAACTTGCTGACTTGATGGAGAGAGATCGCGTTTATCTTGCTGTAAGTAATTTTATTGTG
CAAAAAGTTAATTAAGTTTCTAATATGTTTTATGATAGAGTTTAGAAACTCTTGATAATG
GCAAACCTGTTGGTGTATGTGGGCAGATTATACCATGGAATTTTCCTATTTTGATGGCTG
CATGGAAATTGGGACCAGCACTCGCTACCGGAAACACTATCGTTTTGAAACCGGCTGAAC
AAACACCACTTACTGCTTTATACATTGCTCAATTGAGTCGTGAAGCAGGGTAAGTTCAAG
TTATATTTTAAATTTTTATCAATTACTGATATTATTTTTATTTTAAATCATAATGATATT
GATAAGATTGCTTTTACTGGTAGTACAGAAGTTGGAAAATTAATCAAGGCTGGTGCAGCA
AACACACTGAAGAGAACAACACTCGAACTTGGAGGCAAATCACCAAATATTATTTTATCG
GATGCCGATATGAGTCATGCTGTAGAGACTTCACATTTTGGTCTTTTCTTCAACATGGGT
CAATGTTGTTGTGCAGGTTCAAGAACATTTGTAGAAGACAAGATTTATGATGAGTTTGTT
GAGAGATCAGCAGAACGTGCAAAACGTAGAACTTTTGGAAATCCATTTGACTTATCAACT
GAACAAGGTCCACAAATCGATGCAATTCAACAAAATAAAATTCTTGGTCTAATTGAAACA
GGCAAAAAACAAGGAGCAAAACTTGTCG

>g9968.t4 Gene=g9968 Length=124
MLRTTVRSFIKIHQRFYSIPAAQTNPEILYSGIFINNEWHKSESGKTFKTIDPTTENVIA
EIQESSKVDVDKAVAAAKSAFKLGSPWRRMDASERGNLLFKLADLMERDRVYLAVSNFIV
QKVN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g9968.t4 Gene3D G3DSA:3.40.605.10 Aldehyde Dehydrogenase; Chain A 13 118 0
2 g9968.t4 PANTHER PTHR11699:SF274 DEHYDROGENASE, PUTATIVE-RELATED 19 115 0
3 g9968.t4 PANTHER PTHR11699 ALDEHYDE DEHYDROGENASE-RELATED 19 115 0
1 g9968.t4 Pfam PF00171 Aldehyde dehydrogenase family 39 114 0
4 g9968.t4 SUPERFAMILY SSF53720 ALDH-like 26 115 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed