Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein diaphanous.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g998 g998.t1 isoform g998.t1 7383287 7388575
chr_3 g998 g998.t1 exon g998.t1.exon1 7383287 7384851
chr_3 g998 g998.t1 cds g998.t1.CDS1 7383287 7384851
chr_3 g998 g998.t1 exon g998.t1.exon2 7384917 7384949
chr_3 g998 g998.t1 cds g998.t1.CDS2 7384917 7384949
chr_3 g998 g998.t1 exon g998.t1.exon3 7385010 7385096
chr_3 g998 g998.t1 cds g998.t1.CDS3 7385010 7385096
chr_3 g998 g998.t1 exon g998.t1.exon4 7385158 7386417
chr_3 g998 g998.t1 cds g998.t1.CDS4 7385158 7386417
chr_3 g998 g998.t1 exon g998.t1.exon5 7388266 7388575
chr_3 g998 g998.t1 cds g998.t1.CDS5 7388266 7388575
chr_3 g998 g998.t1 TSS g998.t1 7389415 7389415
chr_3 g998 g998.t1 TTS g998.t1 NA NA

Sequences

>g998.t1 Gene=g998 Length=3255
ATGTCTCGTCACGATAGAACAAAATCAACTGGGGGAGGCGGATTTTTAGATACGCTTTTT
ACGCGATCAACAAAGCGCGGGAATCGTTATCACAATGGTGGCACTCATCAAAGACCAGTT
TCAGCTAATGAAAATGATTATTTTGATGCACAAGAATTAGAAAATATGGTTCTGAGACTT
ACTGTCGAGGAAGTTAATCAGCGTTTTCATGAAATTCTTGAAGATATGAATATACCAAAA
GACAAACGTGATCCATTGATGAAGAAAAATTTAGATGAGAAACGAGATATGTTAAAGATG
CACTTAAAAGGCAAAGCATCTTCTGATAATCGATCAAATTCAAGATTTGAAAAACCGCAT
GACTACATAAACTACCTTCGAGAACCAGAACGAAGTCCATCAAAAATATATCAATGTATC
GAAAGTCTTCGTGTGGCACTTACAAGTAATCCAATAAGTTGGATTAAAGAATTTGGTGAG
CCTGGTATTGATCAAATTGTCAATGTTCTGCAAGAATGTAAAAAAAGAAGAGATTATGAT
AAAATTGAATATGAATGTATACGATGTTTGAAAGCTGTCGTGAACAACACATGGGGATTA
AATGTTGTGCTTCGACCAGATCAACATGCTGCTGTTTTTCTTCTTGCACAATGCCTTGAT
CCATCTAAACCGCAGACTATGTGTGAAGCTGTCAAACTTCTTTCCGGCTTTTGTCTTATT
CAAGAGAGAAATGGTTATGATAAAGTATTGAGAGCAGTGACACAAGCAGCTGCAAATATT
GACAAGAGTGGTGAACGGTTTAGATCAATTGTTGAGGCACTTTTTGTAGAACATGATTTG
GAAGAAGCGAAAGGAATACGAACTGAAACAAAGGGTGAATTGTGTTATCACAGTTTAATT
TTTATCAACACAATAACAAATACACCATCCGATTTAAATTTCCGCTTACATTTGAGATGT
GAAATGATGCGGTCAGGTCTTTATGATCGTTTGGAGCTGCTTTCTAGAATAGTTCAGCAA
TCACAAGATCCACGATTAGAAAAACATTTTAGTCTATTTAATACATTCAGAGAAGAAGAT
TTTGAGGAATTTAGTTCACGTTTTGACCATGTGCGACTTGAAATTGATGATGTGAATGAT
TGTTTTGAACTTTTAAAAAATATGGTTGTTGACACGGCATGTGAGCCCTACTTTCTATCA
ATACTTCAGCATTTGCTTTTTATTCGCGATGACTTCCTATATCGTCCTGCCTATTACAAA
TTAATTGAAGAATGTGTTAGCCAGATTGTTCTTCATAAAAGCGGTGTTGATCCAAATTTC
AAATCACGAGATTTTCATATCGATACATCGGTTCTTCTTGATGATCTTGTTGAACGAAGT
AAAGCTATGGAAATGAAACGAGTTGAAGAATATGAGAAGAAAATGGAAGAATTACAAATT
GCAAAGCAAGAAGCTGAAGCTAAAGCAGCACATTTAGAAGAAAAGCTAAAAGAAATTGAA
GCAAATGGAGGAGTCGTGAAAACAAATAAATTGCCACAAATCAACATTCCACCACCGCCT
GCAATGCCAGGAATGTCATCATCAGCACCTCGACCGCCTCCACCACCAGGATCAGTCACA
AATGGGCCTTTGCCTCCTCCTCCTCCACCTTTGCCTGGAATGGGTGCACCTCGTCCACCA
CCACTTCCAGGAATGGGTATTGGACCACCACCGCCACCAATGATGAATACAAATGCTCCT
CGAATGCCACAACAACCTCAAGCTCTTCCTCATGGATTAAAACCAAAAAAGAAATGGGAC
GTTGATGGACCAATGAAACGAGCTAATTGGAAGGCAATTGTTCCACAAAAAATGAGTGAC
AAATCATTTTGGGTTCGCGTTCATGAAGATAAACTTGCTTCAGATGATATTCTCAATGGC
TTAGCATCGAAATTTTCATCGAAACCAGTTAAAAAGAATACAGAAAAAGATTCAAATGAT
CGTGTGCCAACAACAAAGAAATCAGTTGTCGATTTGAGAGTTTTGGATGCAAAATCAGCT
CAAAATATTTTAATTTTACTTGGTGGGTCGCTTAAACATTTGTCATATGAACAAATTAAA
ATTTACTTGCTTCGTTGCGATATGTCAATGCTGAATGCAAGTATTTTACAACAAATGATT
CAATATCTTCCACCGCCTGATCAACTAAAACGCTTACAAGAATTGAAAGCTAGTGGAGAA
GAACTTTCTGGTGCTGAAAATTTTGCTGCTACAATTGCAGAAATAAAACGACTTGGAGCG
CGTTTACAAAGTTTAAGTTTTCGATTAAATTTCCCTGATTTAGTTAGTGACGTGAAGCCA
GATATAGTTGCCGTTTCAATGGCTTGCGAGGAAGTTAAAACAAGCAGAAAATTTGCGAAG
ATTCTTGAACTTATTTTACTGCTTGGAAATTACATGAATTCTGGATCAAAGAATGAAGCA
GCATTTGGATTTGAAATAAGTTTCCTAACAAAATTGACAAGCACAAAAGACTATGAAAAT
AAGCAGACACTATTGCATTATATTGCAGAAGTCGTTGAACTCAAATTTCCTGATTGTCTC
ACTTTTTACGAGGACTTATCACATGTTGATAAAGCATCTCGTGTAAGTCTCGACAATATT
CAAAAGACAATGAGACAAATGAATGCTTCATTGAAGAACCTTGAATCAGATTTAGCTAAT
AATAAAGTGCCACAATCGCCCGATGATAAATTTATTGAAGTGATGGGTAATTTTTCAGTA
GAGTGCCGCAGTCAAGTTGAAGTACTTGGCAAAATGCAAGTGCAAATGGAGAAAATGTTT
AAAGACCTTGCCGAATATTATGCATTTGATCAAAATAAGTATACAATGGAAGAATTCTTC
ACAGATATAAAGACATTTAAAGATGCCTTTTCGCAAGCGCATCAAGAAAATGTCAAAATT
CGTGAAAATGAAGAGAAAGCAAGACGACAAAAGGAATCAAGAGAGCAACATCAAAAAGAC
ATACAAGAAAGAAATCGAACAAAAACTGGACTTGTCGATATCGATGCTGCTCAAACACAA
GAAGGAGTTATGGATAGTTTGTTAGAAGCACTTCATTCTGGGTCTGCTTTTGGAAATCGT
GTAAGAAAACGTGGCCAAAGGCCGGCAGGTGCTGAAAGAAGGGCACAGCTCTCAAGATCA
CGGTCGAGGACAGGAATAACAGCTGGAAGTTTTACTTCAAGAGAAATGATAGCAAATGAA
CTGTTGGCTGCTTAA

>g998.t1 Gene=g998 Length=1084
MSRHDRTKSTGGGGFLDTLFTRSTKRGNRYHNGGTHQRPVSANENDYFDAQELENMVLRL
TVEEVNQRFHEILEDMNIPKDKRDPLMKKNLDEKRDMLKMHLKGKASSDNRSNSRFEKPH
DYINYLREPERSPSKIYQCIESLRVALTSNPISWIKEFGEPGIDQIVNVLQECKKRRDYD
KIEYECIRCLKAVVNNTWGLNVVLRPDQHAAVFLLAQCLDPSKPQTMCEAVKLLSGFCLI
QERNGYDKVLRAVTQAAANIDKSGERFRSIVEALFVEHDLEEAKGIRTETKGELCYHSLI
FINTITNTPSDLNFRLHLRCEMMRSGLYDRLELLSRIVQQSQDPRLEKHFSLFNTFREED
FEEFSSRFDHVRLEIDDVNDCFELLKNMVVDTACEPYFLSILQHLLFIRDDFLYRPAYYK
LIEECVSQIVLHKSGVDPNFKSRDFHIDTSVLLDDLVERSKAMEMKRVEEYEKKMEELQI
AKQEAEAKAAHLEEKLKEIEANGGVVKTNKLPQINIPPPPAMPGMSSSAPRPPPPPGSVT
NGPLPPPPPPLPGMGAPRPPPLPGMGIGPPPPPMMNTNAPRMPQQPQALPHGLKPKKKWD
VDGPMKRANWKAIVPQKMSDKSFWVRVHEDKLASDDILNGLASKFSSKPVKKNTEKDSND
RVPTTKKSVVDLRVLDAKSAQNILILLGGSLKHLSYEQIKIYLLRCDMSMLNASILQQMI
QYLPPPDQLKRLQELKASGEELSGAENFAATIAEIKRLGARLQSLSFRLNFPDLVSDVKP
DIVAVSMACEEVKTSRKFAKILELILLLGNYMNSGSKNEAAFGFEISFLTKLTSTKDYEN
KQTLLHYIAEVVELKFPDCLTFYEDLSHVDKASRVSLDNIQKTMRQMNASLKNLESDLAN
NKVPQSPDDKFIEVMGNFSVECRSQVEVLGKMQVQMEKMFKDLAEYYAFDQNKYTMEEFF
TDIKTFKDAFSQAHQENVKIRENEEKARRQKESREQHQKDIQERNRTKTGLVDIDAAQTQ
EGVMDSLLEALHSGSAFGNRVRKRGQRPAGAERRAQLSRSRSRTGITAGSFTSREMIANE
LLAA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g998.t1 Coils Coil Coil 461 502 -
17 g998.t1 Coils Coil Coil 877 897 -
16 g998.t1 Coils Coil Coil 980 1000 -
11 g998.t1 Gene3D G3DSA:1.10.20.40 - 52 104 2.6E-7
10 g998.t1 Gene3D G3DSA:1.25.10.10 - 116 365 4.2E-56
13 g998.t1 Gene3D G3DSA:1.10.238.150 - 366 454 3.4E-36
14 g998.t1 Gene3D G3DSA:1.10.12.80 - 576 648 7.6E-28
12 g998.t1 Gene3D G3DSA:1.20.58.630 - 649 756 2.0E-25
9 g998.t1 Gene3D G3DSA:1.20.58.2220 - 757 1050 1.9E-96
25 g998.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 43 -
21 g998.t1 MobiDBLite mobidb-lite consensus disorder prediction 14 43 -
22 g998.t1 MobiDBLite mobidb-lite consensus disorder prediction 977 1009 -
24 g998.t1 MobiDBLite mobidb-lite consensus disorder prediction 1038 1065 -
23 g998.t1 MobiDBLite mobidb-lite consensus disorder prediction 1045 1059 -
5 g998.t1 PANTHER PTHR45691:SF6 PROTEIN DIAPHANOUS 51 1070 1.2E-261
6 g998.t1 PANTHER PTHR45691 PROTEIN DIAPHANOUS 51 1070 1.2E-261
3 g998.t1 Pfam PF06371 Diaphanous GTPase-binding Domain 61 239 4.2E-47
4 g998.t1 Pfam PF06367 Diaphanous FH3 Domain 245 450 2.6E-51
2 g998.t1 Pfam PF02181 Formin Homology 2 Domain 596 970 8.2E-98
1 g998.t1 Pfam PF06345 DRF Autoregulatory Domain 1022 1036 1.2E-5
27 g998.t1 ProSiteProfiles PS51232 Rho GTPase-binding/formin homology 3 (GBD/FH3) domain profile. 57 437 26.597
28 g998.t1 ProSiteProfiles PS51444 Formin homology-2 (FH2) domain profile. 595 996 65.589
26 g998.t1 ProSiteProfiles PS51231 Diaphanous autoregulatory domain (DAD) profile. 1017 1049 10.264
18 g998.t1 SMART SM01140 Drf_GBD_2 57 239 1.2E-59
19 g998.t1 SMART SM01139 Drf_FH3_2 244 448 2.7E-49
20 g998.t1 SMART SM00498 it6_source 595 1039 2.6E-135
7 g998.t1 SUPERFAMILY SSF48371 ARM repeat 65 440 1.22E-90
8 g998.t1 SUPERFAMILY SSF101447 Formin homology 2 domain (FH2 domain) 673 1000 2.88E-91

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0031267 small GTPase binding MF
GO:0003779 actin binding MF
GO:0016043 cellular component organization BP
GO:0030036 actin cytoskeleton organization BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values