General information for g9997.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein Malvolio.
Parent gene
- The parent gene g9997 is located on chr_1: 6488925..6489203 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9997 | g9997.t10 | TSS | g9997.t10 | 6485973 | 6485973 |
| chr_1 | g9997 | g9997.t10 | isoform | g9997.t10 | 6486145 | 6489203 |
| chr_1 | g9997 | g9997.t10 | exon | g9997.t10.exon1 | 6486145 | 6486334 |
| chr_1 | g9997 | g9997.t10 | exon | g9997.t10.exon2 | 6486866 | 6486894 |
| chr_1 | g9997 | g9997.t10 | exon | g9997.t10.exon3 | 6487198 | 6487453 |
| chr_1 | g9997 | g9997.t10 | cds | g9997.t10.CDS1 | 6487275 | 6487453 |
| chr_1 | g9997 | g9997.t10 | exon | g9997.t10.exon4 | 6487506 | 6487789 |
| chr_1 | g9997 | g9997.t10 | cds | g9997.t10.CDS2 | 6487506 | 6487789 |
| chr_1 | g9997 | g9997.t10 | exon | g9997.t10.exon5 | 6487870 | 6488243 |
| chr_1 | g9997 | g9997.t10 | cds | g9997.t10.CDS3 | 6487870 | 6488243 |
| chr_1 | g9997 | g9997.t10 | exon | g9997.t10.exon6 | 6488425 | 6488546 |
| chr_1 | g9997 | g9997.t10 | cds | g9997.t10.CDS4 | 6488425 | 6488546 |
| chr_1 | g9997 | g9997.t10 | exon | g9997.t10.exon7 | 6488604 | 6488861 |
| chr_1 | g9997 | g9997.t10 | cds | g9997.t10.CDS5 | 6488604 | 6488613 |
| chr_1 | g9997 | g9997.t10 | exon | g9997.t10.exon8 | 6488925 | 6489203 |
| chr_1 | g9997 | g9997.t10 | TTS | g9997.t10 | 6489490 | 6489490 |
Sequences
>g9997.t10 Gene=g9997 Length=1792
ATGGCTGAAAGTGATGAACGACATCACGATGAAAGTGATAGAACAGTTCCTTATATAAAT
TACGAGGACCATTTTGAAGATGAGGAGGATGATCTCGGTCCTGAATTCTCAACATATTTT
TCAGACCAAAAAGTTGAAATTCCAACATTTCCTGATGACGATAAAGTAATTTTGAATATT
TTAACTCATAGCATTTACTGGTCCTGGATTTTTAATGAGCTTATCTCGATCCTGGAAATA
TTGAAAGCGATTTACAATCTGGCTTTGTTGCAAAATATAAATTGCTATGGGTTTTGATGT
GGGCAACAATATTAGGCTTAGTAATGCAACGTTTGGCTATGAGAATTGGTGTCGTTACTG
GCCTTCATTTGGCTGAAATGTGCAATCGACAGTACAAGAAATTTCCTCGACTTATTTTAT
GGATTATGATAGAAATTGCTATAATTGGTAGTGATATGCAGGAAGTTATAGGAACAGCAA
TTGCTATATATTTGCTATCAATGAAAGCTGTTCCAATTTATATCGGAGTCATAATCACAA
TTTTTGACACATTTACTTTCCTTTTAATTGACAAATATGGACTTAGAAAATTAGAATTTT
TCTTTGGATTTCTTATCACTGTTATGGCAGTCACATTTGGATATGAATTTTTTGTTGTGA
AGCCAGAAATCACCGAAATAATCAAAGGAGCTGCAATTCCATGGTGTGCCGATTGTGATA
GTAGAGCATTATTGCAAGCTGTGGGAATTGTTGGAGCTGTTATTATGCCACACAATCTTT
ATCTTCATTCAGCTTTAGTAAAATCAAGAAAAGTTGATCGACATCAGCCATCGAAAGTTA
GAGAAGCCAATTATTATTTCTTCATTGAAGCATCTATTGCACTTTTTGTTTCGTTCTTGA
TCAACGTCTTTGTTGTTGCTGTTTTTGCTCACGGTCTTAATGGAAAGACCAATGAGGATG
TAGTTAATGAATGTTTTAACAAGACAATTTATGATGAAGCCAAAGCAATTTTTACTGGTG
ATGAATTAGATGTCGATATTTATAAAGGTGGAATATTTTTGGGATGTACATTTGGTATTG
TTGCACTCTATGTGTGGGCAATTGGGATTCTTGCTGCTGGACAGAGTTCTACTATGACAG
GAACATATAGTGGACAATTTGCAATGGAAGGTTTTCTCAATCTGAAATGGTCTAGATGGC
ATCGTGTTCTTGTTACCCGAATGATTGCAGTTGTTCCAACATTTGTAGTGGGTTACATTT
TATAGTGAAATTGAGCAAGTAACTAAAATGAATGACTACTTAAATGCAATTATGGCATTG
CAACTTCCATTTGCAACAATTCCAACTATTGCATTTTCATCATCGGTTGCAATTATGGGT
GAATTCGTAAATGGCTTTTGGAATAAACTCATATCAATTTTACTTAGCATCACAGTGATA
GGAATCAATTTGACGTTTATAATTAGTCGTTTAGAGCTATCACATGTGTCAGGATGGTTG
ACAATCTTTATTGTAATATTCTCTATTCTCTATGTAATTTTCTGTATATATTTGGTGATT
CATATGATTTGCATGCTTAAACCCGATTCACGAATAGCGAGATCGGTATTTGCAAGAAGG
TTTGTACTAAAAACGGCGAGCTCATCAGCTGATGCTCATGGTGATAGTTCGGTTACAAGG
TATGGGTCATTTTAATACTTTTTCTTCTGTTTATTGGGTGCTTCTTGTTACTAACCAAAT
CAATTTATTTCTTTCTCATATAATTCACTCAAAAAGACCACTCGTTTATTAG
>g9997.t10 Gene=g9997 Length=322
MWATILGLVMQRLAMRIGVVTGLHLAEMCNRQYKKFPRLILWIMIEIAIIGSDMQEVIGT
AIAIYLLSMKAVPIYIGVIITIFDTFTFLLIDKYGLRKLEFFFGFLITVMAVTFGYEFFV
VKPEITEIIKGAAIPWCADCDSRALLQAVGIVGAVIMPHNLYLHSALVKSRKVDRHQPSK
VREANYYFFIEASIALFVSFLINVFVVAVFAHGLNGKTNEDVVNECFNKTIYDEAKAIFT
GDELDVDIYKGGIFLGCTFGIVALYVWAIGILAAGQSSTMTGTYSGQFAMEGFLNLKWSR
WHRVLVTRMIAVVPTFVVGYIL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9997.t10 | PANTHER | PTHR11706:SF40 | NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 2 | 2 | 318 | 3.2E-158 |
| 3 | g9997.t10 | PANTHER | PTHR11706 | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 2 | 318 | 3.2E-158 |
| 5 | g9997.t10 | PRINTS | PR00447 | Natural resistance-associated macrophage protein signature | 41 | 67 | 5.7E-75 |
| 4 | g9997.t10 | PRINTS | PR00447 | Natural resistance-associated macrophage protein signature | 71 | 90 | 5.7E-75 |
| 9 | g9997.t10 | PRINTS | PR00447 | Natural resistance-associated macrophage protein signature | 96 | 117 | 5.7E-75 |
| 6 | g9997.t10 | PRINTS | PR00447 | Natural resistance-associated macrophage protein signature | 148 | 171 | 5.7E-75 |
| 8 | g9997.t10 | PRINTS | PR00447 | Natural resistance-associated macrophage protein signature | 275 | 294 | 5.7E-75 |
| 7 | g9997.t10 | PRINTS | PR00447 | Natural resistance-associated macrophage protein signature | 303 | 320 | 5.7E-75 |
| 1 | g9997.t10 | Pfam | PF01566 | Natural resistance-associated macrophage protein | 1 | 318 | 3.5E-96 |
| 21 | g9997.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 38 | - |
| 30 | g9997.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 39 | 66 | - |
| 25 | g9997.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 67 | 71 | - |
| 32 | g9997.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 72 | 91 | - |
| 18 | g9997.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 92 | 102 | - |
| 31 | g9997.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 103 | 121 | - |
| 23 | g9997.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 122 | 143 | - |
| 29 | g9997.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 144 | 163 | - |
| 20 | g9997.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 164 | 183 | - |
| 27 | g9997.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 184 | 211 | - |
| 24 | g9997.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 212 | 252 | - |
| 26 | g9997.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 253 | 274 | - |
| 19 | g9997.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 275 | 303 | - |
| 28 | g9997.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 304 | 321 | - |
| 22 | g9997.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 322 | 322 | - |
| 17 | g9997.t10 | TIGRFAM | TIGR01197 | nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 1 | 319 | 2.6E-125 |
| 11 | g9997.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 39 | 61 | - |
| 10 | g9997.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 71 | 90 | - |
| 13 | g9997.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 99 | 121 | - |
| 16 | g9997.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 144 | 166 | - |
| 15 | g9997.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 187 | 209 | - |
| 14 | g9997.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 252 | 274 | - |
| 12 | g9997.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 304 | 321 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0046873 | metal ion transmembrane transporter activity | MF |
| GO:0030001 | metal ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
