Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein Malvolio.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9997 g9997.t22 isoform g9997.t22 6488430 6489203
chr_1 g9997 g9997.t22 exon g9997.t22.exon1 6488430 6488542
chr_1 g9997 g9997.t22 cds g9997.t22.CDS1 6488455 6488542
chr_1 g9997 g9997.t22 exon g9997.t22.exon2 6488604 6488861
chr_1 g9997 g9997.t22 cds g9997.t22.CDS2 6488604 6488861
chr_1 g9997 g9997.t22 exon g9997.t22.exon3 6488925 6489090
chr_1 g9997 g9997.t22 cds g9997.t22.CDS3 6488925 6489090
chr_1 g9997 g9997.t22 exon g9997.t22.exon4 6489188 6489203
chr_1 g9997 g9997.t22 cds g9997.t22.CDS4 6489188 6489203
chr_1 g9997 g9997.t22 TTS g9997.t22 6489490 6489490
chr_1 g9997 g9997.t22 TSS g9997.t22 NA NA

Sequences

>g9997.t22 Gene=g9997 Length=553
AGGAACATATAGTGGACAATTTGCAATGGAAGGTTTTCTCAATCTGAAATGGTCTAGATG
GCATCGTGTTCTTGTTACCCGAATGATTGCAGTTGTTCCAACATTTGTAGTGGCATTTTA
TAGTGAAATTGAGCAAGTAACTAAAATGAATGACTACTTAAATGCAATTATGGCATTGCA
ACTTCCATTTGCAACAATTCCAACTATTGCATTTTCATCATCGGTTGCAATTATGGGTGA
ATTCGTAAATGGCTTTTGGAATAAACTCATATCAATTTTACTTAGCATCACAGTGATAGG
AATCAATTTGACGTTTATAATTAGTCGTTTAGAGCTATCACATGTGTCAGGATGGTTGAC
AATCTTTATTGTAATATTCTCTATTCTCTATGTAATTTTCTGTATATATTTGGTGATTCA
TATGATTTGCATGCTTAAACCCGATTCACGAATAGCGAGATCGGTATTTGCAAGAAGGTT
TGTACTAAAAACGGCGAGCTCATCAGCTGATGCTCATGGTGATAGTTCGGTTACAAGACC
ACTCGTTTATTAG

>g9997.t22 Gene=g9997 Length=175
MEGFLNLKWSRWHRVLVTRMIAVVPTFVVAFYSEIEQVTKMNDYLNAIMALQLPFATIPT
IAFSSSVAIMGEFVNGFWNKLISILLSITVIGINLTFIISRLELSHVSGWLTIFIVIFSI
LYVIFCIYLVIHMICMLKPDSRIARSVFARRFVLKTASSSADAHGDSSVTRPLVY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g9997.t22 PANTHER PTHR11706:SF8 PROTEIN MALVOLIO 1 138 8.5E-33
3 g9997.t22 PANTHER PTHR11706 SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 1 138 8.5E-33
4 g9997.t22 PRINTS PR00447 Natural resistance-associated macrophage protein signature 14 31 2.4E-13
5 g9997.t22 PRINTS PR00447 Natural resistance-associated macrophage protein signature 46 65 2.4E-13
1 g9997.t22 Pfam PF01566 Natural resistance-associated macrophage protein 1 76 7.6E-16
11 g9997.t22 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
17 g9997.t22 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 32 -
14 g9997.t22 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 33 43 -
16 g9997.t22 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 44 69 -
12 g9997.t22 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 70 80 -
18 g9997.t22 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 81 99 -
13 g9997.t22 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 100 110 -
15 g9997.t22 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 111 135 -
10 g9997.t22 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 136 175 -
6 g9997.t22 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 12 33 -
7 g9997.t22 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 48 70 -
8 g9997.t22 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 77 99 -
9 g9997.t22 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 109 131 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0046873 metal ion transmembrane transporter activity MF
GO:0030001 metal ion transport BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values