Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein Malvolio.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9997 g9997.t8 TSS g9997.t8 6485973 6485973
chr_1 g9997 g9997.t8 isoform g9997.t8 6486145 6489203
chr_1 g9997 g9997.t8 exon g9997.t8.exon1 6486145 6486334
chr_1 g9997 g9997.t8 exon g9997.t8.exon2 6486866 6486894
chr_1 g9997 g9997.t8 exon g9997.t8.exon3 6487198 6487453
chr_1 g9997 g9997.t8 cds g9997.t8.CDS1 6487275 6487453
chr_1 g9997 g9997.t8 exon g9997.t8.exon4 6487506 6487789
chr_1 g9997 g9997.t8 cds g9997.t8.CDS2 6487506 6487789
chr_1 g9997 g9997.t8 exon g9997.t8.exon5 6487870 6488243
chr_1 g9997 g9997.t8 cds g9997.t8.CDS3 6487870 6488243
chr_1 g9997 g9997.t8 exon g9997.t8.exon6 6488425 6488542
chr_1 g9997 g9997.t8 cds g9997.t8.CDS4 6488425 6488542
chr_1 g9997 g9997.t8 exon g9997.t8.exon7 6488604 6488861
chr_1 g9997 g9997.t8 cds g9997.t8.CDS5 6488604 6488861
chr_1 g9997 g9997.t8 exon g9997.t8.exon8 6488925 6489090
chr_1 g9997 g9997.t8 cds g9997.t8.CDS6 6488925 6489090
chr_1 g9997 g9997.t8 exon g9997.t8.exon9 6489188 6489203
chr_1 g9997 g9997.t8 cds g9997.t8.CDS7 6489188 6489203
chr_1 g9997 g9997.t8 TTS g9997.t8 6489490 6489490

Sequences

>g9997.t8 Gene=g9997 Length=1691
ATGGCTGAAAGTGATGAACGACATCACGATGAAAGTGATAGAACAGTTCCTTATATAAAT
TACGAGGACCATTTTGAAGATGAGGAGGATGATCTCGGTCCTGAATTCTCAACATATTTT
TCAGACCAAAAAGTTGAAATTCCAACATTTCCTGATGACGATAAAGTAATTTTGAATATT
TTAACTCATAGCATTTACTGGTCCTGGATTTTTAATGAGCTTATCTCGATCCTGGAAATA
TTGAAAGCGATTTACAATCTGGCTTTGTTGCAAAATATAAATTGCTATGGGTTTTGATGT
GGGCAACAATATTAGGCTTAGTAATGCAACGTTTGGCTATGAGAATTGGTGTCGTTACTG
GCCTTCATTTGGCTGAAATGTGCAATCGACAGTACAAGAAATTTCCTCGACTTATTTTAT
GGATTATGATAGAAATTGCTATAATTGGTAGTGATATGCAGGAAGTTATAGGAACAGCAA
TTGCTATATATTTGCTATCAATGAAAGCTGTTCCAATTTATATCGGAGTCATAATCACAA
TTTTTGACACATTTACTTTCCTTTTAATTGACAAATATGGACTTAGAAAATTAGAATTTT
TCTTTGGATTTCTTATCACTGTTATGGCAGTCACATTTGGATATGAATTTTTTGTTGTGA
AGCCAGAAATCACCGAAATAATCAAAGGAGCTGCAATTCCATGGTGTGCCGATTGTGATA
GTAGAGCATTATTGCAAGCTGTGGGAATTGTTGGAGCTGTTATTATGCCACACAATCTTT
ATCTTCATTCAGCTTTAGTAAAATCAAGAAAAGTTGATCGACATCAGCCATCGAAAGTTA
GAGAAGCCAATTATTATTTCTTCATTGAAGCATCTATTGCACTTTTTGTTTCGTTCTTGA
TCAACGTCTTTGTTGTTGCTGTTTTTGCTCACGGTCTTAATGGAAAGACCAATGAGGATG
TAGTTAATGAATGTTTTAACAAGACAATTTATGATGAAGCCAAAGCAATTTTTACTGGTG
ATGAATTAGATGTCGATATTTATAAAGGTGGAATATTTTTGGGATGTACATTTGGTATTG
TTGCACTCTATGTGTGGGCAATTGGGATTCTTGCTGCTGGACAGAGTTCTACTATGACAG
GAACATATAGTGGACAATTTGCAATGGAAGGTTTTCTCAATCTGAAATGGTCTAGATGGC
ATCGTGTTCTTGTTACCCGAATGATTGCAGTTGTTCCAACATTTGTAGTGGCATTTTATA
GTGAAATTGAGCAAGTAACTAAAATGAATGACTACTTAAATGCAATTATGGCATTGCAAC
TTCCATTTGCAACAATTCCAACTATTGCATTTTCATCATCGGTTGCAATTATGGGTGAAT
TCGTAAATGGCTTTTGGAATAAACTCATATCAATTTTACTTAGCATCACAGTGATAGGAA
TCAATTTGACGTTTATAATTAGTCGTTTAGAGCTATCACATGTGTCAGGATGGTTGACAA
TCTTTATTGTAATATTCTCTATTCTCTATGTAATTTTCTGTATATATTTGGTGATTCATA
TGATTTGCATGCTTAAACCCGATTCACGAATAGCGAGATCGGTATTTGCAAGAAGGTTTG
TACTAAAAACGGCGAGCTCATCAGCTGATGCTCATGGTGATAGTTCGGTTACAAGACCAC
TCGTTTATTAG

>g9997.t8 Gene=g9997 Length=464
MWATILGLVMQRLAMRIGVVTGLHLAEMCNRQYKKFPRLILWIMIEIAIIGSDMQEVIGT
AIAIYLLSMKAVPIYIGVIITIFDTFTFLLIDKYGLRKLEFFFGFLITVMAVTFGYEFFV
VKPEITEIIKGAAIPWCADCDSRALLQAVGIVGAVIMPHNLYLHSALVKSRKVDRHQPSK
VREANYYFFIEASIALFVSFLINVFVVAVFAHGLNGKTNEDVVNECFNKTIYDEAKAIFT
GDELDVDIYKGGIFLGCTFGIVALYVWAIGILAAGQSSTMTGTYSGQFAMEGFLNLKWSR
WHRVLVTRMIAVVPTFVVAFYSEIEQVTKMNDYLNAIMALQLPFATIPTIAFSSSVAIMG
EFVNGFWNKLISILLSITVIGINLTFIISRLELSHVSGWLTIFIVIFSILYVIFCIYLVI
HMICMLKPDSRIARSVFARRFVLKTASSSADAHGDSSVTRPLVY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g9997.t8 PANTHER PTHR11706:SF40 NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 2 2 432 1.6E-181
3 g9997.t8 PANTHER PTHR11706 SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 2 432 1.6E-181
5 g9997.t8 PRINTS PR00447 Natural resistance-associated macrophage protein signature 41 67 2.7E-84
4 g9997.t8 PRINTS PR00447 Natural resistance-associated macrophage protein signature 71 90 2.7E-84
10 g9997.t8 PRINTS PR00447 Natural resistance-associated macrophage protein signature 96 117 2.7E-84
7 g9997.t8 PRINTS PR00447 Natural resistance-associated macrophage protein signature 148 171 2.7E-84
9 g9997.t8 PRINTS PR00447 Natural resistance-associated macrophage protein signature 275 294 2.7E-84
8 g9997.t8 PRINTS PR00447 Natural resistance-associated macrophage protein signature 303 320 2.7E-84
6 g9997.t8 PRINTS PR00447 Natural resistance-associated macrophage protein signature 335 354 2.7E-84
1 g9997.t8 Pfam PF01566 Natural resistance-associated macrophage protein 1 365 2.8E-107
27 g9997.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 38 -
40 g9997.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 39 66 -
31 g9997.t8 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 67 71 -
42 g9997.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 72 91 -
23 g9997.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 92 102 -
35 g9997.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 103 121 -
29 g9997.t8 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 122 143 -
38 g9997.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 144 163 -
25 g9997.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 164 183 -
37 g9997.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 184 211 -
30 g9997.t8 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 212 252 -
36 g9997.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 253 274 -
22 g9997.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 275 304 -
34 g9997.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 305 324 -
28 g9997.t8 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 325 335 -
33 g9997.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 336 358 -
24 g9997.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 359 369 -
39 g9997.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 370 388 -
32 g9997.t8 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 389 399 -
41 g9997.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 400 424 -
26 g9997.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 425 464 -
21 g9997.t8 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 1 359 5.1E-138
14 g9997.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 39 61 -
11 g9997.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 71 90 -
16 g9997.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 99 121 -
20 g9997.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 144 166 -
18 g9997.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 187 209 -
13 g9997.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 252 274 -
17 g9997.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 304 322 -
12 g9997.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 337 359 -
19 g9997.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 366 388 -
15 g9997.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 398 420 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0046873 metal ion transmembrane transporter activity MF
GO:0030001 metal ion transport BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed