General information for g10696.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Sodium-coupled monocarboxylate transporter 2.
Parent gene
- The parent gene g10696 is located on chr_1: 11405373..11406491 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10696 | g10696.t2 | TSS | g10696.t2 | 11404019 | 11404019 |
| chr_1 | g10696 | g10696.t2 | isoform | g10696.t2 | 11404061 | 11406491 |
| chr_1 | g10696 | g10696.t2 | exon | g10696.t2.exon1 | 11404061 | 11404349 |
| chr_1 | g10696 | g10696.t2 | exon | g10696.t2.exon2 | 11404500 | 11404633 |
| chr_1 | g10696 | g10696.t2 | exon | g10696.t2.exon3 | 11404842 | 11404925 |
| chr_1 | g10696 | g10696.t2 | exon | g10696.t2.exon4 | 11404993 | 11405074 |
| chr_1 | g10696 | g10696.t2 | exon | g10696.t2.exon5 | 11405210 | 11405377 |
| chr_1 | g10696 | g10696.t2 | exon | g10696.t2.exon6 | 11405435 | 11406491 |
| chr_1 | g10696 | g10696.t2 | cds | g10696.t2.CDS1 | 11405475 | 11406491 |
| chr_1 | g10696 | g10696.t2 | TTS | g10696.t2 | 11406509 | 11406509 |
Sequences
>g10696.t2 Gene=g10696 Length=1814
ATGGACGAAAATCAGAAAAATCAACAAGGCAATGATGCCGTTGAGGATTTAAGAAATTCC
CTAAAGCACTTTGGGGTGGTGGATTATTTGGTATTTGGTATTTTACTTTTGTCGTGTACT
ATCGTTGGGCTTTATTTTGGCTATACAGATTATCAAAAAAAGAAACGAGTGAAAAATCAA
CGAAGAGGCTCGGAGGCAATGGACTATCTTGTAGGAGGACGAAACATGAAAGTCTTTCCC
GTGGCAATGTCTCTTGTAGCCTCTTGTATTTCTGGAATTGCATTGTTAGGCACAAGTACT
GAAATATACCTTTATGGAGCACAATACGCGTATATTTTAATTGGATACACAATAGCAGCT
TTAATTGTTAATTATACAATCATTCCAATCTTCCACGAACTTCAAATTACTTCTGCTTAT
GAGTACCTCCAAATGAGATTTGATGTTAAAGTATGTATTTTTGGTTCAGCAATGTATTCA
TTATCAACTTTATTATGGATGCCAATTGCTATTTATGTACCAGCTTTAGCATTCAGTCAA
ACAACTGGTATTGATGTACACATGATTACACCTATCGTGATGGGCATCTTTATATGTTCT
TACACAACATGTAGGCTGTTGTATGGACTGATGTTATTCAGATTATGCTCATGTATGGAA
CATTAGTTGTGATTATTGTTAGAGGCACTTCACTCGTTGGAGGATTTTCTGTAGTCATAG
AGAAAAATATTGAGAGTGGAAGACTGGCACCACCTGATTTTAATTTTGATCCTACTTTGA
GAACTTCATTTTGGATAATGGTCATTGGTGGTTCATTTTTTCGTTTATATGCTGGAATAA
ATCAATCAATGATACAGCGATATATGGCATTGAAGAACGTCCATGTAGCACGAAAATGTC
AATATGTCTATTTAGGTGGAATAATTATTTTGAATCTCATGTGTTATTACAATGGTCTAC
TACTTTATGCTTATTTTTATGATTGTGATCCATTGACAACAAAATTGGCAAAGGCAAAAG
ATCAATTAATGCCACTCTTGGTGATGGAAATATTGCGAGATATTCCTGGAATGCCTGGAT
TATTTATAGCTGGTGTGTTTTCTGCTGCACTTTCATCACTTTCAACAGCTTTAAACTCAT
TTTCTGCGGTTGTTCTCGAGGACTTTTGCAAACCATTTGCAAAGGATGGTGTGTCAGAAC
GAACAAGTGCAATAATAATGCGTATGACAGTGTTAGTGGTTGGAGTGATGAGCGTAGCTC
TTGTATATGTTGTGCAGCATATGGGATCCGTGCTTCAACTAGCATACACTATACCATCAG
TTGCATTCGGGCCGATGTTGGGCATTTATATAATTGGACTTTGTATTCCGCACATTGGAA
AACGTGCGACATTCTATGGAGCTTTGACCGGATGTAGTGTAATGATTGCTTTCATTTCGA
AAGTACAAATTGAAGTTGCTTTGGGCAAAATTAGTCACCCAATAAAACCAGTCTCAATTG
ATGGTTGTACATACGATTTTGTAGCTACTAATATGACAACAAACATCAATGAGCCTTCAG
TTACGGAAAGAAATATCTTTCACATTTCATTTATATATTACACTCTACTGGGGTCGGTTA
TCGTTATCGTAACATCAATACTATACAGTTTTATTGTGGGCTTCAATGATCTTAGTGATG
TCGATATTAATTTGCTTGCTCCTTTCCTGAGAAAATACTTTAAGAATGCAGAAAGAGATG
ATGAAGACAAAAAGTACCAAATAATTCTTGACAGAGACTCTATTATAGATAAGAAAAAAA
ATTGTGACGAATAA
>g10696.t2 Gene=g10696 Length=338
MVIGGSFFRLYAGINQSMIQRYMALKNVHVARKCQYVYLGGIIILNLMCYYNGLLLYAYF
YDCDPLTTKLAKAKDQLMPLLVMEILRDIPGMPGLFIAGVFSAALSSLSTALNSFSAVVL
EDFCKPFAKDGVSERTSAIIMRMTVLVVGVMSVALVYVVQHMGSVLQLAYTIPSVAFGPM
LGIYIIGLCIPHIGKRATFYGALTGCSVMIAFISKVQIEVALGKISHPIKPVSIDGCTYD
FVATNMTTNINEPSVTERNIFHISFIYYTLLGSVIVIVTSILYSFIVGFNDLSDVDINLL
APFLRKYFKNAERDDEDKKYQIILDRDSIIDKKKNCDE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g10696.t2 | Gene3D | G3DSA:1.20.1730.10 | - | 1 | 296 | 4.1E-47 |
| 2 | g10696.t2 | PANTHER | PTHR42985 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER | 1 | 312 | 6.6E-107 |
| 3 | g10696.t2 | PANTHER | PTHR42985:SF5 | LP24461P | 1 | 312 | 6.6E-107 |
| 1 | g10696.t2 | Pfam | PF00474 | Sodium:solute symporter family | 15 | 205 | 1.2E-16 |
| 14 | g10696.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 35 | - |
| 21 | g10696.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 36 | 60 | - |
| 17 | g10696.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 61 | 94 | - |
| 24 | g10696.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 95 | 119 | - |
| 13 | g10696.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 120 | 138 | - |
| 20 | g10696.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 139 | 159 | - |
| 18 | g10696.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 160 | 164 | - |
| 23 | g10696.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 165 | 190 | - |
| 12 | g10696.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 191 | 196 | - |
| 22 | g10696.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 197 | 218 | - |
| 16 | g10696.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 219 | 264 | - |
| 19 | g10696.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 265 | 289 | - |
| 15 | g10696.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 290 | 338 | - |
| 11 | g10696.t2 | ProSiteProfiles | PS50283 | Sodium:solute symporter family profile. | 1 | 219 | 22.54 |
| 7 | g10696.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 36 | 58 | - |
| 4 | g10696.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 95 | 117 | - |
| 6 | g10696.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 138 | 160 | - |
| 9 | g10696.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 170 | 192 | - |
| 5 | g10696.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 199 | 221 | - |
| 8 | g10696.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 265 | 287 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed