Gene loci information

Isoforms of this gene

  • There are 6 isoforms that are expressed from this gene.
  • The longest transcript is g10696.t1
  • List of isoforms

g10696.t1, g10696.t2, g10696.t3, g10696.t4, g10696.t5, g10696.t6

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g10696.t1) is OG0000126. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 2 XP_012060376.1, XP_012059590.1
Apis mellifera AMELL 1 GB51995-PA
Culicoides sonorensis CSONO 5 CSON003951-1, CSON001029-1, CSON003949-1, CSON001903-1, CSON013148-1
Polypedilum nubifer PNUBI 8 Pn.09276, Pn.08784, Pn.15325, Pn.09159, Pn.11012, Pn.12043, Pn.12042, Pn.09277
Polypedilum vanderplanki PVAND 11 g10695.t1, g16374.t1, g12037.t1, g14930.t1, g16377.t1, g10696.t1, g586.t1, g16376.t1, g3434.t1, g6015.t1, g16375.t1
Polypedilum pembai PPEMB 7 g5644.t1, g4381.t1, g9515.t1, g12730.t1, g14319.t1, g5643.t1, g700.t1
Belgica antarctica BANTA 3 IU25_12249-mRNA-1, IU25_01929-mRNA-1, IU25_11896-mRNA-1
Clunio marinus CMARI 3 CRK86766.1, CRK97129.1, CRL02233.1
Aedes aegypti lvpagwg AAEGYL 4 AAEL006487-PA, AAEL007016-PA, AAEL012691-PA, AAEL006995-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 5 EDS36416.1, EDS36415.1, EDS34332.1, EDS36414.1, EDS39425.1
Culex quinquefasciatus CQUIN 5 CPIJ002534-PA, CPIJ002532-PA, CPIJ010265-PA, CPIJ013621-PA, CPIJ002533-PA
Anopheles atroparvus AATRO 5 AATE012233-PA, AATE016104-PA, AATE019885-PA, AATE001141-PA, AATE003314-PA
Anopheles sinensis china ASINEC 7 ASIC008760-PA, ASIC004600-PA, ASIC004601-PA, ASIC004599-PA, ASIC011432-PA, ASIC008759-PA, ASIC004598-PA
Anopheles dirus ADIRU 2 ADIR009899-PA, ADIR010046-PA
Anopheles farauti AFARA 5 AFAF016852-PA, AFAF001315-PA, AFAF007084-PA, AFAF015942-PA, AFAF013342-PA
Anopheles epiroticus AEPIR 4 AEPI006950-PA, AEPI009294-PA, AEPI006156-PA, AEPI009293-PA
Anopheles christyi ACHRI 3 ACHR004731-PA, ACHR005374-PA, ACHR002509-PA
Anopheles merus AMERU 6 AMEM015354-PA, AMEM019366-PA, AMEM019355-PA, AMEM019356-PA, AMEM000064-PA, AMEM019367-PA
Anopheles melas AMELA 5 AMEC011671-PA, AMEC023275-PA, AMEC009683-PA, AMEC003327-PA, AMEC018418-PA
Anopheles arabiensis AARAB 6 AARA017308-PA, AARA017305-PA, AARA001996-PA, AARA017307-PA, AARA017303-PA, AARA001652-PA
Anopheles coluzzii ACOLU 4 ACOM023585-PA, ACOM033738-PA, ACOM034291-PA, ACOM023582-PA
Anopheles coluzzii ngousso ACOLUN 6 ACON013429-PA, ACON013403-PA, ACON001966-PA, ACON001965-PA, ACON001185-PA, ACON001550-PA
Anopheles gambiae AGAMB 6 AGAP013429-PA, AGAP001965-PA, AGAP001185-PA, AGAP001550-PA, AGAP013403-PA, AGAP001966-PA
Anopheles quadriannulatus AQUAD 2 AQUA000417-PA, AQUA011638-PA
Anopheles minimus AMINI 3 AMIN003276-PA, AMIN002292-PA, AMIN002439-PA
Anopheles culicifacies ACULI 5 ACUA024689-PA, ACUA000395-PA, ACUA018716-PA, ACUA001637-PA, ACUA008502-PA
Anopheles funestus AFUNE 6 AFUN021895-PA, AFUN021892-PA, AFUN021891-PA, AFUN021894-PA, AFUN009224-PA, AFUN001196-PA
Anopheles stephensi indian ASTEPI 5 ASTEI00311-PA, ASTEI08018-PA, ASTEI05437-PA, ASTEI00312-PA, ASTEI00310-PA
Anopheles stephensi ASTEP 4 ASTE003444-PA, ASTE005781-PA, ASTE002775-PA, ASTE002776-PA
Anopheles albimanus AALBI 2 AALB009397-PA, AALB009128-PA
Anopheles darlingi ADARL 5 ADAC100482-PA, ADAC100484-PA, ADAC010522-PA, ADAC009905-PA, ADAC006529-PA
Drosophila willistoni DWILL 5 FBpp0245295, FBpp0375682, FBpp0376983, FBpp0240939, FBpp0242016
Drosophila pseudoobscura DPSEU 4 FBpp0339814, FBpp0330194, FBpp0275193, FBpp0284905
Drosophila persimilis DPERS 7 FBpp0178813, FBpp0176714, FBpp0185911, FBpp0178812, FBpp0185910, FBpp0185909, FBpp0185912
Drosophila ananassae DANAN 8 FBpp0348198, FBpp0119981, FBpp0119980, FBpp0124340, FBpp0119978, FBpp0351027, FBpp0351932, FBpp0342243
Drosophila melanogaster DMELA 3 FBpp0071015, FBpp0288579, FBpp0081881
Drosophila sechellia DSECH 6 FBpp0191755, FBpp0191757, FBpp0207578, FBpp0199002, FBpp0191759, FBpp0191758
Drosophila simulans DSIMU 4 FBpp0320529, FBpp0314271, FBpp0317714, FBpp0215248
Drosophila erecta DEREC 5 FBpp0135770, FBpp0368517, FBpp0367699, FBpp0138193, FBpp0368919
Drosophila yakuba DYAKU 5 FBpp0362296, FBpp0269635, FBpp0355301, FBpp0260731, FBpp0360337
Drosophila virilis DVIRI 4 FBpp0238213, FBpp0233627, FBpp0391201, FBpp0238312
Drosophila mojavensis DMOJA 3 FBpp0389697, FBpp0159277, FBpp0384808
Drosophila grimshawi DGRIM 3 FBpp0157905, FBpp0145793, FBpp0404656
Lucilia cuprina LCUPR 3 KNC28169, KNC34106, KNC34200
Musca domestica MDOME 5 MDOA003868-PA, MDOA009974-PA, MDOA010593-PA, MDOA006668-PA, MDOA000715-PB
Stomoxys calcitrans SCALC 4 SCAU014836-PA, SCAU016318-PA, SCAU015289-PA, SCAU013940-PA
Glossina brevipalpis GBREV 3 GBRI014685-PA, GBRI042097-PA, GBRI009849-PA
Glossina palpalis GPALP 3 GPPI023765-PA, GPPI007920-PA, GPPI038265-PA
Glossina austeni GAUST 3 GAUT040519-PA, GAUT010136-PA, GAUT033149-PA
Glossina pallidipes GPALL 3 GPAI031783-PA, GPAI039232-PA, GPAI012427-PA
Glossina morsitans GMORS 3 GMOY006677-PA, GMOY005240-PA, GMOY009059-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g10696.t1) is OG0000216. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN5869_c0_g2_i3.p1, TRINITY_DN138695_c0_g1_i1.p1, TRINITY_DN5703_c0_g1_i11.p1, TRINITY_DN5869_c0_g1_i3.p1, TRINITY_DN62395_c0_g1_i2.p1, TRINITY_DN18202_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG07249, PSG06940, PSG08938, PSG11011, PSG07430, PSG07257
Trissopelopia nemorum TNEMO TRINITY_DN817_c0_g3_i2.p1, TRINITY_DN817_c0_g4_i1.p1, TRINITY_DN3716_c0_g1_i2.p1, TRINITY_DN9362_c0_g2_i1.p1, TRINITY_DN161_c0_g1_i1.p1, TRINITY_DN9362_c0_g1_i4.p1, TRINITY_DN8096_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN5956_c0_g1_i2.p1, TRINITY_DN4553_c0_g1_i10.p1, TRINITY_DN6509_c0_g1_i8.p1
Telmatogeton pecinata TPECI TRINITY_DN4511_c0_g1_i2.p1, TRINITY_DN3719_c0_g1_i1.p1, TRINITY_DN5098_c0_g1_i22.p1
Cricotopus draysoni CDRAY TRINITY_DN2609_c0_g1_i1.p1, TRINITY_DN25431_c0_g1_i1.p1, TRINITY_DN23930_c0_g1_i1.p1
Clunio marinus CMARI CRK94159.1, CRK86766.1, CRK97129.1, CRL02233.1
Cardiocladius sp CARDI TRINITY_DN2094_c0_g1_i1.p1, TRINITY_DN4856_c0_g2_i5.p1, TRINITY_DN1632_c0_g1_i5.p1
Belgica antarctica BANTA IU25_12249-mRNA-1, IU25_01929-mRNA-1, IU25_11896-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN1758_c0_g1_i7.p1, TRINITY_DN51221_c0_g1_i2.p1, TRINITY_DN2429_c0_g1_i2.p1, TRINITY_DN6874_c0_g1_i3.p1, TRINITY_DN492_c0_g1_i7.p1, TRINITY_DN4718_c0_g1_i5.p1, TRINITY_DN8460_c0_g1_i2.p1
Chironomus riparius CRIPA g9282.t1, g7050.t1, g5933.t1, g4591.t1, g5451.t1, g7864.t1, g7175.t1
Chironomus columbiensis CCOLU TRINITY_DN1881_c0_g1_i2.p1, TRINITY_DN44208_c0_g1_i1.p1, TRINITY_DN25143_c0_g1_i2.p1, TRINITY_DN3912_c0_g1_i6.p1, TRINITY_DN5317_c0_g1_i4.p1, TRINITY_DN17948_c0_g1_i1.p1, TRINITY_DN10097_c0_g1_i2.p1
Chironomus tentans CTENT g5092.t1, g5091.t1, g14503.t1, g7847.t1, g10007.t1
Chironomus dilutus CDILU TRINITY_DN752_c0_g1_i4.p1, TRINITY_DN2852_c0_g1_i28.p1, TRINITY_DN10466_c0_g1_i2.p1, TRINITY_DN6554_c0_g1_i1.p1, TRINITY_DN6461_c0_g2_i2.p1, TRINITY_DN15493_c0_g1_i12.p1, TRINITY_DN1170_c1_g1_i28.p1
Polypedilum nubifer PNUBI Pn.11012, Pn.09159, Pn.09276, Pn.08784, Pn.15325, Pn.12042, Pn.09277
Polypedilum vanderplanki PVAND g10695.t1, g16374.t1, g12037.t1, g16377.t1, g10696.t1, g586.t1, g3434.t1, g6015.t1
Polypedilum pembai PPEMB g5644.t1, g4381.t1, g9515.t1, g12730.t1, g14319.t1, g5643.t1, g700.t1
Culicoides sonorensis CSONO CSON003951-1, CSON001029-1, CSON003949-1, CSON001903-1, CSON013148-1
Aedes aegypti lvpagwg AAEGYL AAEL006487-PA, AAEL007016-PA, AAEL012691-PA, AAEL006995-PA
Anopheles gambiae AGAMB AGAP013429-PA, AGAP001965-PA, AGAP001185-PA, AGAP001550-PA, AGAP013403-PA, AGAP001966-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation