General information for g10696.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Sodium-coupled monocarboxylate transporter 2.
Parent gene
- The parent gene g10696 is located on chr_1: 11405373..11406491 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10696 | g10696.t3 | TSS | g10696.t3 | 11404019 | 11404019 |
| chr_1 | g10696 | g10696.t3 | isoform | g10696.t3 | 11404061 | 11406491 |
| chr_1 | g10696 | g10696.t3 | exon | g10696.t3.exon1 | 11404061 | 11404349 |
| chr_1 | g10696 | g10696.t3 | exon | g10696.t3.exon2 | 11404500 | 11404633 |
| chr_1 | g10696 | g10696.t3 | exon | g10696.t3.exon3 | 11404842 | 11404925 |
| chr_1 | g10696 | g10696.t3 | exon | g10696.t3.exon4 | 11404993 | 11405074 |
| chr_1 | g10696 | g10696.t3 | exon | g10696.t3.exon5 | 11405196 | 11405377 |
| chr_1 | g10696 | g10696.t3 | cds | g10696.t3.CDS1 | 11405265 | 11405377 |
| chr_1 | g10696 | g10696.t3 | exon | g10696.t3.exon6 | 11405435 | 11406491 |
| chr_1 | g10696 | g10696.t3 | cds | g10696.t3.CDS2 | 11405435 | 11406491 |
| chr_1 | g10696 | g10696.t3 | TTS | g10696.t3 | 11406509 | 11406509 |
Sequences
>g10696.t3 Gene=g10696 Length=1828
ATGGACGAAAATCAGAAAAATCAACAAGGCAATGATGCCGTTGAGGATTTAAGAAATTCC
CTAAAGCACTTTGGGGTGGTGGATTATTTGGTATTTGGTATTTTACTTTTGTCGTGTACT
ATCGTTGGGCTTTATTTTGGCTATACAGATTATCAAAAAAAGAAACGAGTGAAAAATCAA
CGAAGAGGCTCGGAGGCAATGGACTATCTTGTAGGAGGACGAAACATGAAAGTCTTTCCC
GTGGCAATGTCTCTTGTAGCCTCTTGTATTTCTGGAATTGCATTGTTAGGCACAAGTACT
GAAATATACCTTTATGGAGCACAATACGCGTATATTTTAATTGGATACACAATAGCAGCT
TTAATTGTTAATTATACAATCATTCCAATCTTCCACGAACTTCAAATTACTTCTGCTTAT
GAGTACCTCCAAATGAGATTTGATGTTAAAGTATGTATTTTTGGTTCAGCAATGTATTCA
TTATCAACTTTATTATGGATGCCAATTGCTATTTATGTACCAGCTTTAGCATTCAGTCAA
ACAACTGGTATTGATGTACACATGATTACACCTATCGTGATGGGCATCTATATATCATCT
ATATTATATGTTCTTACACAACATGTAGGCTGTTGTATGGACTGATGTTATTCAGATTAT
GCTCATGTATGGAACATTAGTTGTGATTATTGTTAGAGGCACTTCACTCGTTGGAGGATT
TTCTGTAGTCATAGAGAAAAATATTGAGAGTGGAAGACTGGCACCACCTGATTTTAATTT
TGATCCTACTTTGAGAACTTCATTTTGGATAATGGTCATTGGTGGTTCATTTTTTCGTTT
ATATGCTGGAATAAATCAATCAATGATACAGCGATATATGGCATTGAAGAACGTCCATGT
AGCACGAAAATGTCAATATGTCTATTTAGGTGGAATAATTATTTTGAATCTCATGTGTTA
TTACAATGGTCTACTACTTTATGCTTATTTTTATGATTGTGATCCATTGACAACAAAATT
GGCAAAGGCAAAAGATCAATTAATGCCACTCTTGGTGATGGAAATATTGCGAGATATTCC
TGGAATGCCTGGATTATTTATAGCTGGTGTGTTTTCTGCTGCACTTTCATCACTTTCAAC
AGCTTTAAACTCATTTTCTGCGGTTGTTCTCGAGGACTTTTGCAAACCATTTGCAAAGGA
TGGTGTGTCAGAACGAACAAGTGCAATAATAATGCGTATGACAGTGTTAGTGGTTGGAGT
GATGAGCGTAGCTCTTGTATATGTTGTGCAGCATATGGGATCCGTGCTTCAACTAGCATA
CACTATACCATCAGTTGCATTCGGGCCGATGTTGGGCATTTATATAATTGGACTTTGTAT
TCCGCACATTGGAAAACGTGCGACATTCTATGGAGCTTTGACCGGATGTAGTGTAATGAT
TGCTTTCATTTCGAAAGTACAAATTGAAGTTGCTTTGGGCAAAATTAGTCACCCAATAAA
ACCAGTCTCAATTGATGGTTGTACATACGATTTTGTAGCTACTAATATGACAACAAACAT
CAATGAGCCTTCAGTTACGGAAAGAAATATCTTTCACATTTCATTTATATATTACACTCT
ACTGGGGTCGGTTATCGTTATCGTAACATCAATACTATACAGTTTTATTGTGGGCTTCAA
TGATCTTAGTGATGTCGATATTAATTTGCTTGCTCCTTTCCTGAGAAAATACTTTAAGAA
TGCAGAAAGAGATGATGAAGACAAAAAGTACCAAATAATTCTTGACAGAGACTCTATTAT
AGATAAGAAAAAAAATTGTGACGAATAA
>g10696.t3 Gene=g10696 Length=389
MLMYGTLVVIIVRGTSLVGGFSVVIEKNIESGRLAPPDFNFDPTLRTSFWIMVIGGSFFR
LYAGINQSMIQRYMALKNVHVARKCQYVYLGGIIILNLMCYYNGLLLYAYFYDCDPLTTK
LAKAKDQLMPLLVMEILRDIPGMPGLFIAGVFSAALSSLSTALNSFSAVVLEDFCKPFAK
DGVSERTSAIIMRMTVLVVGVMSVALVYVVQHMGSVLQLAYTIPSVAFGPMLGIYIIGLC
IPHIGKRATFYGALTGCSVMIAFISKVQIEVALGKISHPIKPVSIDGCTYDFVATNMTTN
INEPSVTERNIFHISFIYYTLLGSVIVIVTSILYSFIVGFNDLSDVDINLLAPFLRKYFK
NAERDDEDKKYQIILDRDSIIDKKKNCDE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g10696.t3 | Gene3D | G3DSA:1.20.1730.10 | - | 1 | 347 | 9.0E-54 |
| 2 | g10696.t3 | PANTHER | PTHR42985 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER | 2 | 363 | 1.2E-128 |
| 3 | g10696.t3 | PANTHER | PTHR42985:SF5 | LP24461P | 2 | 363 | 1.2E-128 |
| 1 | g10696.t3 | Pfam | PF00474 | Sodium:solute symporter family | 2 | 256 | 1.2E-18 |
| 15 | g10696.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 6 | - |
| 26 | g10696.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 25 | - |
| 22 | g10696.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 26 | 44 | - |
| 29 | g10696.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 45 | 65 | - |
| 16 | g10696.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 66 | 85 | - |
| 28 | g10696.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 86 | 111 | - |
| 21 | g10696.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 112 | 145 | - |
| 24 | g10696.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 146 | 170 | - |
| 17 | g10696.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 171 | 189 | - |
| 27 | g10696.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 190 | 210 | - |
| 20 | g10696.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 211 | 215 | - |
| 30 | g10696.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 216 | 241 | - |
| 14 | g10696.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 242 | 247 | - |
| 23 | g10696.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 248 | 269 | - |
| 19 | g10696.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 270 | 315 | - |
| 25 | g10696.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 316 | 340 | - |
| 18 | g10696.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 341 | 389 | - |
| 13 | g10696.t3 | ProSiteProfiles | PS50283 | Sodium:solute symporter family profile. | 1 | 270 | 23.244 |
| 8 | g10696.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 2 | 24 | - |
| 9 | g10696.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 44 | 66 | - |
| 4 | g10696.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 87 | 109 | - |
| 10 | g10696.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 146 | 168 | - |
| 7 | g10696.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 189 | 211 | - |
| 5 | g10696.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 221 | 243 | - |
| 11 | g10696.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 250 | 272 | - |
| 6 | g10696.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 316 | 338 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed