Gene loci information

Transcript annotation

  • This transcript has been annotated as RAC serine/threonine-protein kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11018 g11018.t1 isoform g11018.t1 13422172 13424576
chr_1 g11018 g11018.t1 exon g11018.t1.exon1 13422172 13422234
chr_1 g11018 g11018.t1 cds g11018.t1.CDS1 13422172 13422234
chr_1 g11018 g11018.t1 exon g11018.t1.exon2 13422298 13422751
chr_1 g11018 g11018.t1 cds g11018.t1.CDS2 13422298 13422751
chr_1 g11018 g11018.t1 exon g11018.t1.exon3 13422811 13422975
chr_1 g11018 g11018.t1 cds g11018.t1.CDS3 13422811 13422975
chr_1 g11018 g11018.t1 exon g11018.t1.exon4 13423039 13423190
chr_1 g11018 g11018.t1 cds g11018.t1.CDS4 13423039 13423190
chr_1 g11018 g11018.t1 exon g11018.t1.exon5 13423248 13423445
chr_1 g11018 g11018.t1 cds g11018.t1.CDS5 13423248 13423445
chr_1 g11018 g11018.t1 exon g11018.t1.exon6 13423509 13423671
chr_1 g11018 g11018.t1 cds g11018.t1.CDS6 13423509 13423671
chr_1 g11018 g11018.t1 exon g11018.t1.exon7 13424203 13424576
chr_1 g11018 g11018.t1 cds g11018.t1.CDS7 13424203 13424576
chr_1 g11018 g11018.t1 TSS g11018.t1 NA NA
chr_1 g11018 g11018.t1 TTS g11018.t1 NA NA

Sequences

>g11018.t1 Gene=g11018 Length=1569
ATGTCACTTGCATCAACATCAATTGATTCAGGACAATTGCCTGATCTTGTATCACATAAT
ATTGACGTCAACTCGCGTCAAATCATTAAAGAAGGATGGTTATTTAAACGTGGTGAACAT
ATAAAAAATTGGAGATCGCGCTATTTTATTTTACGATCAGACGGCTCACTTGTAGGCTAT
AAGAATCGACCAGACGCTCAAATTCCAACTGAGCCGTCCAATAATTTTACTGTTGCACGA
TGTCAAATCATGTCAGTTGATCGACCAAGACCTTATACATTTATAATCAGAGGCCTACAA
TGGACCACTGTCATCGAGCGAATGTTTTATGTCGAGACAGAGCATGAGAGAACCCAATGG
GTTGAAGCTATACGGAGTGTTGCAAACTGTTTGAGCGAAATTGATCAACAAGAAGAGCCA
GTAGCAGAATTGAATGATAATGATGATGTAGAAATGGCATCAATTGCGGAAGAAGAAGAA
TTGGATGAAAAACTCTCTCATCAAGGAACATCGACAGGAAGTGGAAAGAAGAAAATTACA
TTAGAGAATTTTGAATTTTTAAAAGTGCTTGGACGAGGGTCTTATGGCAAAGTAATTTTA
TGTCGGGAAAAATCTACAGCCAAGTTATATGCGATAAAAATCCTTAAAAAGGAAGTCATC
ATACAAAAGAGTGAAGTCGAACACACGATGGCTGAAAATCGAGTTTTACGCAAGACAAAT
CATCCATTTTTAATTTCATTGCGTTATTCATTTCGCACTAATGAGCGACTATGTTTTGTC
ATGCAGTATGTCAACGGCGGTGAATTATATTTTCATCTGAGAAATGAAAAAATATTTTCA
GAAGATCGTACTCGATTTTATGGAGCAGAAATCATTTCAGCACTTGGATATTTGCATTCG
CACAACATTGTTTATCGTGATGTAAAATTAGAGAATCTTTTACTTGATAAAGATGGTCAT
ATAAAAATTGCAGATTTTGGTTTATGTAAGGAAGATATTACATATGATAGAACAACGAAT
ACATTTTGTGGAACACCTGAATATTTGGCACCAGAAATGTTAGAAGACAACGATTATGGA
TTAGCAGTCGATTGGTGGGGCACGGGTGTCGTCATGTACGAAATGATGTGTGGTCAATTA
CCGTTTGATAATCGTGACCATGACATTTTATTCAAGCAAATTATGATGGATGATGTAAAG
TTTCGACGCCCTGTTTCTAGTGAAGCAAAATCACTTTTAACTGGATTACTTGAAAAAAGT
CCCCAAAAGCGCCTCGGTGGTGGACCAGATGATGTTCGAGAAATAATGGTGCATCCTTTC
TTTGCTAGCATCAATTGGTATGATTTAGTGAATAAGAAAATTATTCCACCGTTCAAGCCG
CAAGTTACCTCAGATACTGATACACGCTATTTCGATTCTGAATTTACGGGTGAGAGTGTC
GAATTGACACCGCCTGATCCAGCTGTTCAATTACAATCAATTCAGGAAGAACCTCATTTT
TCTCAATTCAGTTATCAAGCAATTGCTTCATTTATGAGCAACAATTCTGCATTAGTTTCA
TTACCATAG

>g11018.t1 Gene=g11018 Length=522
MSLASTSIDSGQLPDLVSHNIDVNSRQIIKEGWLFKRGEHIKNWRSRYFILRSDGSLVGY
KNRPDAQIPTEPSNNFTVARCQIMSVDRPRPYTFIIRGLQWTTVIERMFYVETEHERTQW
VEAIRSVANCLSEIDQQEEPVAELNDNDDVEMASIAEEEELDEKLSHQGTSTGSGKKKIT
LENFEFLKVLGRGSYGKVILCREKSTAKLYAIKILKKEVIIQKSEVEHTMAENRVLRKTN
HPFLISLRYSFRTNERLCFVMQYVNGGELYFHLRNEKIFSEDRTRFYGAEIISALGYLHS
HNIVYRDVKLENLLLDKDGHIKIADFGLCKEDITYDRTTNTFCGTPEYLAPEMLEDNDYG
LAVDWWGTGVVMYEMMCGQLPFDNRDHDILFKQIMMDDVKFRRPVSSEAKSLLTGLLEKS
PQKRLGGGPDDVREIMVHPFFASINWYDLVNKKIIPPFKPQVTSDTDTRYFDSEFTGESV
ELTPPDPAVQLQSIQEEPHFSQFSYQAIASFMSNNSALVSLP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g11018.t1 CDD cd01241 PH_PKB 26 131 4.68937E-60
12 g11018.t1 CDD cd05571 STKc_PKB 188 507 0.0
9 g11018.t1 Gene3D G3DSA:2.30.29.30 - 22 140 1.0E-31
8 g11018.t1 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 182 478 2.7E-132
10 g11018.t1 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 268 462 2.7E-132
4 g11018.t1 PANTHER PTHR24351:SF209 NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 29 499 5.7E-237
5 g11018.t1 PANTHER PTHR24351 RIBOSOMAL PROTEIN S6 KINASE 29 499 5.7E-237
2 g11018.t1 Pfam PF00169 PH domain 29 127 1.1E-15
3 g11018.t1 Pfam PF00069 Protein kinase domain 184 441 4.3E-74
1 g11018.t1 Pfam PF00433 Protein kinase C terminal domain 462 505 2.9E-8
14 g11018.t1 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 190 213 -
13 g11018.t1 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 303 315 -
20 g11018.t1 ProSiteProfiles PS50003 PH domain profile. 27 129 17.002
19 g11018.t1 ProSiteProfiles PS50011 Protein kinase domain profile. 184 441 48.781
18 g11018.t1 ProSiteProfiles PS51285 AGC-kinase C-terminal domain profile. 442 515 15.709
16 g11018.t1 SMART SM00233 PH_update 28 131 9.2E-16
17 g11018.t1 SMART SM00220 serkin_6 184 441 1.8E-105
15 g11018.t1 SMART SM00133 pkinase_C_6 442 507 1.4E-19
6 g11018.t1 SUPERFAMILY SSF50729 PH domain-like 24 134 1.18E-23
7 g11018.t1 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 179 500 1.62E-96

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004674 protein serine/threonine kinase activity MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values