Gene loci information

Isoforms of this gene

  • There are 7 isoforms that are expressed from this gene.
  • The longest transcript is g11018.t4
  • List of isoforms

g11018.t1, g11018.t2, g11018.t3, g11018.t4, g11018.t5, g11018.t6, g11018.t7

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Pathway

  • This gene belongs to the following 2 pathways
## Warning in keggs == k_to_ko$V1: longer object length is not a multiple of
## shorter object length
ko04068
ko04151
ko01521
ko01522
ko01524
ko04010
ko04012
ko04014
ko04015
ko04022
ko04024
ko04062
ko04066
ko04068
ko04071
ko04072
ko04140
ko04150
ko04151
ko04152
ko04210
ko04211
ko04212
ko04213
ko04218
ko04261
ko04370
ko04371
ko04380
ko04510
ko04550
ko04611
ko04613
ko04620
ko04625
ko04630
ko04660
ko04662
ko04664
ko04666
ko04668
ko04722
ko04725
ko04728
ko04910
ko04914
ko04915
ko04917
ko04919
ko04920
ko04922
ko04923
ko04926
ko04929
ko04931
ko04932
ko04933
ko04935
ko04936
ko04973
ko05010
ko05017
ko05131
ko05132
ko05135
ko05142
ko05145
ko05152
ko05160
ko05161
ko05162
ko05163
ko05164
ko05165
ko05166
ko05167
ko05168
ko05169
ko05170
ko05200
ko05205
ko05207
ko05208
ko05210
ko05211
ko05212
ko05213
ko05214
ko05215
ko05218
ko05220
ko05221
ko05222
ko05223
ko05224
ko05225
ko05226
ko05230
ko05231
ko05235
ko05415
ko05417
ko05418

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g11018.t4) is OG0000063. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 7 XP_012062953.1, XP_012057639.1, XP_012060433.1, XP_012058802.1, XP_012060629.1, XP_012063901.1, XP_012058906.1
Apis mellifera AMELL 7 GB43135-PA, GB41862-PA, GB43222-PA, GB42064-PA, GB42063-PA, GB41860-PA, GB47743-PA
Culicoides sonorensis CSONO 5 CSON003246-1, CSON010624-1, CSON014807-2, CSON007437-1, CSON003316-2
Polypedilum nubifer PNUBI 7 Pn.16676, Pn.08943, Pn.12528, Pn.16338, Pn.16318, Pn.01868, Pn.09032
Polypedilum vanderplanki PVAND 8 g11019.t1, g5649.t1, g12754.t1, g9654.t1, g11524.t1, g11018.t4, g12752.t1, g14087.t1
Polypedilum pembai PPEMB 8 g11240.t1, g13544.t1, g148.t1, g744.t1, g8270.t1, g1213.t1, g11968.t1, g7563.t1
Belgica antarctica BANTA 3 IU25_05141-mRNA-1, IU25_06112-mRNA-1, IU25_02301-mRNA-1
Clunio marinus CMARI 5 CRK99307.1, CRK99016.1, CRK98781.1, CRL01744.1, CRL04082.1
Aedes aegypti lvpagwg AAEGYL 5 AAEL019843-PH, AAEL008823-PA, AAEL009466-PB, AAEL000810-PB, AAEL019951-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 10 EDS40256.1, EDS30043.1, EDS32697.1, EDS45706.1, EDS32379.1, EDS38639.1, EDS27502.1, EDS29954.1, EDS30042.1, EDS28490.1
Culex quinquefasciatus CQUIN 10 CPIJ018495-PA, CPIJ013331-PA, CPIJ005701-PA, CPIJ006329-PA, CPIJ019407-PA, CPIJ019937-PA, CPIJ019408-PA, CPIJ007754-PA, CPIJ020037-PA, CPIJ013835-PA
Anopheles atroparvus AATRO 6 AATE018169-PA, AATE000033-PA, AATE014376-PA, AATE020586-PA, AATE003712-PA, AATE002558-PA
Anopheles sinensis china ASINEC 7 ASIC013049-PA, ASIC008777-PA, ASIC021398-PA, ASIC008776-PA, ASIC006275-PA, ASIC022329-PA, ASIC006276-PA
Anopheles dirus ADIRU 6 ADIR009553-PA, ADIR001173-PA, ADIR009909-PA, ADIR004367-PA, ADIR001170-PA, ADIR014781-PA
Anopheles farauti AFARA 6 AFAF013705-PA, AFAF017493-PA, AFAF001031-PA, AFAF006766-PA, AFAF017768-PA, AFAF018693-PA
Anopheles epiroticus AEPIR 5 AEPI000693-PA, AEPI000668-PA, AEPI004341-PA, AEPI002002-PA, AEPI000669-PA
Anopheles christyi ACHRI 5 ACHR002605-PA, ACHR008163-PA, ACHR010147-PA, ACHR010059-PA, ACHR009972-PA
Anopheles merus AMERU 6 AMEM012618-PA, AMEM004657-PA, AMEM014919-PA, AMEM014862-PA, AMEM000448-PA, AMEM014152-PA
Anopheles melas AMELA 7 AMEC019007-PA, AMEC012326-PA, AMEC021279-PA, AMEC000548-PA, AMEC000305-PA, AMEC003682-PA, AMEC001937-PA
Anopheles arabiensis AARAB 6 AARA017689-PA, AARA000773-PA, AARA016788-PA, AARA010697-PA, AARA016842-PA, AARA004095-PA
Anopheles coluzzii ACOLU 5 ACOM034650-PA, ACOM042131-PA, ACOM023426-PA, ACOM026368-PA, ACOM036420-PA
Anopheles coluzzii ngousso ACOLUN 6 ACON029538-PB, ACON029239-PA, ACON012252-PA, ACON029244-PA, ACON002748-PA, ACON002161-PA
Anopheles gambiae AGAMB 6 AGAP029239-PA, AGAP012252-PA, AGAP002748-PA, AGAP029538-PC, AGAP029244-PA, AGAP002161-PA
Anopheles quadriannulatus AQUAD 6 AQUA015016-PA, AQUA008656-PA, AQUA001787-PA, AQUA001786-PA, AQUA009786-PA, AQUA007794-PA
Anopheles minimus AMINI 6 AMIN014281-PA, AMIN006915-PA, AMIN005705-PA, AMIN004407-PA, AMIN003564-PA, AMIN005710-PA
Anopheles culicifacies ACULI 7 ACUA009065-PA, ACUA010119-PA, ACUA015782-PA, ACUA012022-PA, ACUA017702-PA, ACUA022695-PA, ACUA020883-PA
Anopheles funestus AFUNE 5 AFUN014536-PA, AFUN020206-PC, AFUN020523-PA, AFUN020033-PB, AFUN016344-PA
Anopheles stephensi indian ASTEPI 4 ASTEI05881-PA, ASTEI02448-PA, ASTEI03156-PA, ASTEI06256-PA
Anopheles stephensi ASTEP 4 ASTE008485-PA, ASTE006927-PA, ASTE011627-PA, ASTE011624-PA
Anopheles albimanus AALBI 5 AALB006313-PA, AALB010180-PA, AALB002391-PA, AALB010657-PA, AALB006314-PA
Anopheles darlingi ADARL 6 ADAC000350-PA, ADAC003782-PA, ADAC000760-PA, ADAC005513-PA, ADAC003781-PA, ADAC002326-PA
Drosophila willistoni DWILL 7 FBpp0251175, FBpp0378526, FBpp0242403, FBpp0242405, FBpp0251173, FBpp0378936, FBpp0245636
Drosophila pseudoobscura DPSEU 6 FBpp0332633, FBpp0273337, FBpp0277776, FBpp0301270, FBpp0277775, FBpp0335488
Drosophila persimilis DPERS 5 FBpp0175678, FBpp0175676, FBpp0188356, FBpp0189351, FBpp0176327
Drosophila ananassae DANAN 6 FBpp0351084, FBpp0350220, FBpp0119462, FBpp0350184, FBpp0114615, FBpp0344301
Drosophila melanogaster DMELA 6 FBpp0086197, FBpp0309085, FBpp0082682, FBpp0084728, FBpp0302921, FBpp0086196
Drosophila sechellia DSECH 6 FBpp0203215, FBpp0205761, FBpp0194233, FBpp0193039, FBpp0201641, FBpp0203217
Drosophila simulans DSIMU 6 FBpp0209635, FBpp0328202, FBpp0219807, FBpp0217476, FBpp0315325, FBpp0209634
Drosophila erecta DEREC 6 FBpp0364900, FBpp0130180, FBpp0139190, FBpp0136265, FBpp0135524, FBpp0139191
Drosophila yakuba DYAKU 6 FBpp0357406, FBpp0360075, FBpp0256640, FBpp0256843, FBpp0354734, FBpp0268834
Drosophila virilis DVIRI 6 FBpp0393174, FBpp0400838, FBpp0235433, FBpp0231296, FBpp0396437, FBpp0235432
Drosophila mojavensis DMOJA 6 FBpp0383795, FBpp0381348, FBpp0171872, FBpp0170858, FBpp0170379, FBpp0170380
Drosophila grimshawi DGRIM 6 FBpp0417199, FBpp0411813, FBpp0407984, FBpp0151472, FBpp0156555, FBpp0419023
Lucilia cuprina LCUPR 8 KNC27080, KNC27553, KNC33448, KNC27555, KNC31888, KNC33392, KNC21657, KNC21747
Musca domestica MDOME 6 MDOA013451-PE, MDOA011531-PB, MDOA004052-PB, MDOA002435-PA, MDOA000338-PB, MDOA008448-PB
Stomoxys calcitrans SCALC 6 SCAU005847-PA, SCAU008077-PE, SCAU011582-PA, SCAU010076-PB, SCAU003188-PA, SCAU006388-PD
Glossina brevipalpis GBREV 9 GBRI034249-PA, GBRI022639-PA, GBRI031572-PA, GBRI021919-PA, GBRI033637-PA, GBRI034248-PA, GBRI003995-PA, GBRI009863-PA, GBRI034247-PA
Glossina palpalis GPALP 9 GPPI039740-PA, GPPI042026-PA, GPPI033574-PA, GPPI013150-PA, GPPI013145-PA, GPPI051075-PA, GPPI013152-PA, GPPI050573-PA, GPPI023958-PA
Glossina austeni GAUST 8 GAUT031769-PA, GAUT050488-PA, GAUT042630-PA, GAUT042636-PA, GAUT049218-PA, GAUT050511-PA, GAUT042629-PA, GAUT044479-PA
Glossina pallidipes GPALL 9 GPAI020374-PA, GPAI028639-PA, GPAI028630-PA, GPAI043909-PA, GPAI037822-PA, GPAI043908-PA, GPAI028758-PA, GPAI043910-PA, GPAI004345-PA
Glossina morsitans GMORS 6 GMOY012181-PA, GMOY005802-PA, GMOY004974-PA, GMOY004136-PA, GMOY001293-PA, GMOY010009-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g11018.t4) is OG0004209. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN29203_c0_g1_i1.p3, TRINITY_DN19047_c3_g1_i7.p1
Parochlus steinenii PSTEI PSG08500
Trissopelopia nemorum TNEMO none
Paraheptagyia tonnoiri PTONN TRINITY_DN161_c0_g1_i15.p1
Telmatogeton pecinata TPECI TRINITY_DN2319_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN2910_c0_g1_i6.p1, TRINITY_DN80830_c0_g1_i1.p1
Clunio marinus CMARI CRK99014.1, CRK99016.1
Cardiocladius sp CARDI TRINITY_DN80_c0_g2_i6.p1, TRINITY_DN80_c0_g1_i10.p1
Belgica antarctica BANTA none
Kiefferophyes invenustulus KINVE TRINITY_DN4767_c1_g1_i1.p1, TRINITY_DN17128_c0_g2_i2.p1, TRINITY_DN3609_c2_g1_i1.p1, TRINITY_DN44337_c0_g1_i1.p1, TRINITY_DN55672_c0_g1_i1.p1, TRINITY_DN4767_c0_g1_i8.p1, TRINITY_DN3609_c0_g1_i10.p1
Chironomus riparius CRIPA g3910.t1, g16194.t1
Chironomus columbiensis CCOLU TRINITY_DN88_c0_g1_i1.p1
Chironomus tentans CTENT g6223.t1
Chironomus dilutus CDILU TRINITY_DN5030_c0_g1_i14.p1
Polypedilum nubifer PNUBI Pn.09032
Polypedilum vanderplanki PVAND g11019.t1, g11018.t4
Polypedilum pembai PPEMB g1213.t1
Culicoides sonorensis CSONO none
Aedes aegypti lvpagwg AAEGYL AAEL008823-PA
Anopheles gambiae AGAMB AGAP002161-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation