General information for g11018.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative RAC serine/threonine-protein kinase.
Parent gene
- The parent gene g11018 is located on chr_1: 13423510..13425801 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11018 | g11018.t7 | isoform | g11018.t7 | 13423510 | 13425801 |
| chr_1 | g11018 | g11018.t7 | exon | g11018.t7.exon1 | 13423510 | 13423671 |
| chr_1 | g11018 | g11018.t7 | cds | g11018.t7.CDS1 | 13423512 | 13423671 |
| chr_1 | g11018 | g11018.t7 | exon | g11018.t7.exon2 | 13424203 | 13424660 |
| chr_1 | g11018 | g11018.t7 | cds | g11018.t7.CDS2 | 13424203 | 13424576 |
| chr_1 | g11018 | g11018.t7 | exon | g11018.t7.exon3 | 13424719 | 13424772 |
| chr_1 | g11018 | g11018.t7 | exon | g11018.t7.exon4 | 13425608 | 13425801 |
| chr_1 | g11018 | g11018.t7 | TSS | g11018.t7 | NA | NA |
| chr_1 | g11018 | g11018.t7 | TTS | g11018.t7 | NA | NA |
Sequences
>g11018.t7 Gene=g11018 Length=868
ATGCTTTCATGAAATACGTGATTATCGTATAAAGTTTTTTTTCACAAATATAAAAGTTTG
TGCAAAAATAAGAAAAAGTGAATTAAAACTAGTGATAAATAGTAAAATAATTTGCTCTTA
AACCTCTAAATTGCACTACAATTAAATTTGTGAATGCTTGTATTGAATTGTGTAGTCAAA
ATTTAAATAAAAAAGAACTTTCCATCAAAACAATAATATTGTAATTAATTGTGTATAAAG
AAGGAAATCATATTGAGAAATTAATATTATTTGCATCATCATCAATAGTTTGTTTTGGGC
AATAAAGAAGATAAAAGAAAAGTTGAGGAAAAATGTCACTTGCATCAACATCAATTGATT
CAGGACAATTGCCTGATCTTGTATCACATAATATTGACGTCAACTCGCGTCAAATCATTA
AAGAAGGATGGTTATTTAAACGTGGTGAACATATAAAAAATTGGAGATCGCGCTATTTTA
TTTTACGATCAGACGGCTCACTTGTAGGCTATAAGAATCGACCAGACGCTCAAATTCCAA
CTGAGCCGTCCAATAATTTTACTGTTGCACGATGTCAAATCATGTCAGTTGATCGACCAA
GACCTTATACATTTATAATCAGAGGCCTACAATGGACCACTGTCATCGAGCGAATGTTTT
ATGTCGAGACAGAGCATGAGAGAACCCAATGGGTTGAAGCTATACGGAGTGTTGCAAACT
GTTTGAGCGAAATTGATCAACAAGAAGAGCCAGTAGCAGAATTGAATGATAATGATGATG
TAGAAATGGCATCAATTGCGGAAGAAGAAGAATTGGATGAAAAACTCTCTCATCAAGGAA
CATCGACAGGAAGTGGAAAGAAGAAAAT
>g11018.t7 Gene=g11018 Length=178
MSLASTSIDSGQLPDLVSHNIDVNSRQIIKEGWLFKRGEHIKNWRSRYFILRSDGSLVGY
KNRPDAQIPTEPSNNFTVARCQIMSVDRPRPYTFIIRGLQWTTVIERMFYVETEHERTQW
VEAIRSVANCLSEIDQQEEPVAELNDNDDVEMASIAEEEELDEKLSHQGTSTGSGKKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11018.t7 | CDD | cd01241 | PH_PKB | 26 | 131 | 4.04054E-63 |
| 5 | g11018.t7 | Gene3D | G3DSA:2.30.29.30 | - | 22 | 141 | 9.2E-33 |
| 8 | g11018.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 158 | - |
| 9 | g11018.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 178 | - |
| 2 | g11018.t7 | PANTHER | PTHR24351:SF209 | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 29 | 177 | 3.1E-40 |
| 3 | g11018.t7 | PANTHER | PTHR24351 | RIBOSOMAL PROTEIN S6 KINASE | 29 | 177 | 3.1E-40 |
| 1 | g11018.t7 | Pfam | PF00169 | PH domain | 29 | 127 | 1.2E-16 |
| 10 | g11018.t7 | ProSiteProfiles | PS50003 | PH domain profile. | 27 | 129 | 17.002 |
| 7 | g11018.t7 | SMART | SM00233 | PH_update | 28 | 131 | 9.2E-16 |
| 4 | g11018.t7 | SUPERFAMILY | SSF50729 | PH domain-like | 24 | 135 | 1.07E-24 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
