Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 4c21.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1225 g1225.t1 TTS g1225.t1 8907815 8907815
chr_3 g1225 g1225.t1 isoform g1225.t1 8907897 8915917
chr_3 g1225 g1225.t1 exon g1225.t1.exon1 8907897 8908270
chr_3 g1225 g1225.t1 cds g1225.t1.CDS1 8907897 8908270
chr_3 g1225 g1225.t1 exon g1225.t1.exon2 8908538 8908729
chr_3 g1225 g1225.t1 cds g1225.t1.CDS2 8908538 8908729
chr_3 g1225 g1225.t1 exon g1225.t1.exon3 8909404 8909418
chr_3 g1225 g1225.t1 cds g1225.t1.CDS3 8909404 8909418
chr_3 g1225 g1225.t1 exon g1225.t1.exon4 8910326 8910621
chr_3 g1225 g1225.t1 cds g1225.t1.CDS4 8910326 8910621
chr_3 g1225 g1225.t1 exon g1225.t1.exon5 8912504 8912960
chr_3 g1225 g1225.t1 cds g1225.t1.CDS5 8912504 8912960
chr_3 g1225 g1225.t1 exon g1225.t1.exon6 8915812 8915917
chr_3 g1225 g1225.t1 cds g1225.t1.CDS6 8915812 8915917
chr_3 g1225 g1225.t1 TSS g1225.t1 8916162 8916162

Sequences

>g1225.t1 Gene=g1225 Length=1440
ATGTGTCTTATGCAAAATTATCGTAAGATTATGCTTGACATTCCTGCACCTCGAGTTTTA
CCCATCATAGGACATGCGCATTTAATGATTGGACTTAACAATGAAGAACAACTTAAATTG
ATAACTGAGTTATGTTTTTTGTATCCGAATCTTGTTAAAATTTGGTTCTTCCACATAATG
GGTATCTTAGTTAGCAATCCTGATCTCATACAAAAAGTTTTCAACTCGGAAATTTGCATG
GAAAAGCCATATATTGCCTACAAGCTATTTAATTTGGACAATGGACTATTGTCAGCCCGT
TACAGCCGATGGAAGCATGATCGTCGTTTCTTCAACAATTCATTTAAAATTTCAACGCTT
CAGACTTTCATTCCGATTTTTATTGAAACTGCTGATAAACTCACGAGCGAAATCACCAGA
TTTGTTGATGACAAAGCTTTTAACATTCTCGACTACACGATCCGTTGCACACTAAAGATG
ATCTGCTCAACTTCACTTGGTATGAAAATTTCCGACTCTGAGAATGAAGAGACTTTTAAT
AAAGTTTTTCATGCAGTTGAATTCACATCTGAGTCTGCTGCTCTACTCCAAAATAAACCA
TTGATTTATCCGGATACAATTTATAAATTGACACCACGTTATCATGAAAACTACCGACAA
GGAAAATATTTGAATGATTTTCATCAACGAATTATCGATGAAAGACGTGAAATATTGAAA
AATAACAATAATAAAATTGATGGAAGCACTGAAACATCTGACCCTGGTTATAACATTTTC
ATCGATCATATTTTGAATAATGAAAACATGTTTACTGATCAGGATATTAGAGATCATGTC
ATCACTGTTCTTTCTGCCGGCTATGAGACATCAGCAACTGCAACTGCTCACTGCATTCTT
TTCCTTGCCCAACATCAAAATGTTCAAAATAAACTGGTTGAAGAAATCAATGAAGTTTTT
GCAGCTGATGATGAGATAACACTTGAAGCACTTAATAAACTACAATATATGGAACGTGTG
ATAAAAGAAACATTAAGAGTTGCGCCTGTTGGACCTGTTATTTTCCGAGAAGCAATGCAA
GATTTCGAAATTCAAGAAGGGTTAGTCATACCAAAAGGCACAACATTCATACTCAACATT
TATGCTTTACATCGTCGAAAGGATATTTGGGGTGAAAAGGCAGAAGAATTTGATCCCGAT
AACTTCTTGCCAGAGAATGTTGCCAAACGACATCCTTGCAGTTTCATTCCATTCTCAACA
GGAAGACGAAATTGCATTGGTCATCGTTATGCAATGATTTCAATGAAAATTATTCTACTT
AAATTATTGCAGCAATTTAAATTTTCAACAGATTTAAAGTATGAAGAGCTGAGATTTAAG
GCAGTGTTAACATTAAAGCTTATTGGTGAACATCTTGTATCAATTACTAATAGATATTAG

>g1225.t1 Gene=g1225 Length=479
MCLMQNYRKIMLDIPAPRVLPIIGHAHLMIGLNNEEQLKLITELCFLYPNLVKIWFFHIM
GILVSNPDLIQKVFNSEICMEKPYIAYKLFNLDNGLLSARYSRWKHDRRFFNNSFKISTL
QTFIPIFIETADKLTSEITRFVDDKAFNILDYTIRCTLKMICSTSLGMKISDSENEETFN
KVFHAVEFTSESAALLQNKPLIYPDTIYKLTPRYHENYRQGKYLNDFHQRIIDERREILK
NNNNKIDGSTETSDPGYNIFIDHILNNENMFTDQDIRDHVITVLSAGYETSATATAHCIL
FLAQHQNVQNKLVEEINEVFAADDEITLEALNKLQYMERVIKETLRVAPVGPVIFREAMQ
DFEIQEGLVIPKGTTFILNIYALHRRKDIWGEKAEEFDPDNFLPENVAKRHPCSFIPFST
GRRNCIGHRYAMISMKIILLKLLQQFKFSTDLKYEELRFKAVLTLKLIGEHLVSITNRY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g1225.t1 Gene3D G3DSA:1.10.630.10 Cytochrome p450 12 470 3.8E-104
2 g1225.t1 PANTHER PTHR24291:SF105 CYTOCHROME P450 4P1-RELATED 8 468 2.4E-87
3 g1225.t1 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 8 468 2.4E-87
8 g1225.t1 PRINTS PR00463 E-class P450 group I signature 275 292 2.5E-16
10 g1225.t1 PRINTS PR00385 P450 superfamily signature 286 303 1.1E-10
4 g1225.t1 PRINTS PR00463 E-class P450 group I signature 295 321 2.5E-16
6 g1225.t1 PRINTS PR00463 E-class P450 group I signature 338 356 2.5E-16
9 g1225.t1 PRINTS PR00385 P450 superfamily signature 339 350 1.1E-10
7 g1225.t1 PRINTS PR00463 E-class P450 group I signature 415 425 2.5E-16
11 g1225.t1 PRINTS PR00385 P450 superfamily signature 416 425 1.1E-10
5 g1225.t1 PRINTS PR00463 E-class P450 group I signature 425 448 2.5E-16
12 g1225.t1 PRINTS PR00385 P450 superfamily signature 425 436 1.1E-10
1 g1225.t1 Pfam PF00067 Cytochrome P450 15 451 1.3E-92
14 g1225.t1 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 418 427 -
13 g1225.t1 SUPERFAMILY SSF48264 Cytochrome P450 14 478 2.88E-109

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed