Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g1225.t1
  • List of isoforms

g1225.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g1225.t1) is OG0000020. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 0 none
Apis mellifera AMELL 0 none
Culicoides sonorensis CSONO 13 CSON007994-1, CSON009089-1, CSON006775-1, CSON003582-1, CSON006010-1, CSON006022-1, CSON006017-1, CSON004594-1, CSON013790-1, CSON006028-1, CSON011825-1, CSON011259-1, CSON003102-1
Polypedilum nubifer PNUBI 19 Pn.06187, Pn.02714, Pn.01152, Pn.10743, Pn.16449, Pn.14346, Pn.14306, Pn.00991, Pn.11891, Pn.01942, Pn.01227, Pn.01943, Pn.11892, Pn.14149, Pn.00462, Pn.16004, Pn.12660, Pn.01941, Pn.12756
Polypedilum vanderplanki PVAND 16 g1089.t1, g4192.t1, g11042.t1, g11037.t1, g1567.t1, g581.t1, g12352.t1, g6077.t1, g6082.t1, g9243.t1, g17041.t1, g11039.t1, g1225.t1, g11246.t1, g1090.t1, g1091.t1
Polypedilum pembai PPEMB 18 g2467.t1, g2466.t1, g7959.t1, g11007.t1, g11458.t1, g10392.t1, g10702.t1, g8783.t1, g705.t1, g436.t1, g765.t1, g11008.t1, g11109.t1, g6990.t1, g9858.t1, g9691.t1, g8785.t1, g6991.t1
Belgica antarctica BANTA 10 IU25_06876-mRNA-1, IU25_08237-mRNA-1, IU25_12536-mRNA-1, IU25_03536-mRNA-1, IU25_10441-mRNA-1, IU25_09949-mRNA-1, IU25_03007-mRNA-1, IU25_08876-mRNA-1, IU25_03006-mRNA-1, IU25_06875-mRNA-1
Clunio marinus CMARI 15 CRL05090.1, CRK99682.1, CRK97919.1, CRK92409.1, CRK99235.1, CRK99228.1, CRK99374.1, CRL03274.1, CRK98668.1, CRL06511.1, CRK99233.1, CRK91006.1, CRL01119.1, CRK91004.1, CRK99229.1
Aedes aegypti lvpagwg AAEGYL 33 AAEL020266-PA, AAEL023949-PA, AAEL005700-PA, AAEL000340-PB, AAEL005695-PA, AAEL005775-PA, AAEL000326-PB, AAEL005771-PB, AAEL017215-PB, AAEL012762-PB, AAEL000338-PB, AAEL012772-PA, AAEL012765-PA, AAEL019910-PA, AAEL012769-PB, AAEL011761-PA, AAEL022568-PA, AAEL005788-PA, AAEL011770-PA, AAEL012761-PA, AAEL006257-PA, AAEL017136-PB, AAEL018028-PB, AAEL000357-PA, AAEL006044-PA, AAEL019659-PA, AAEL024573-PA, AAEL012766-PA, AAEL006058-PA, AAEL020553-PA, AAEL000320-PA, AAEL005696-PB, AAEL012770-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 42 EDS36145.1, EDS34339.1, EDS43227.1, EDS44777.1, EDS45034.1, EDS43230.1, EDS29595.1, EDS36709.1, EDS29598.1, EDS29590.1, EDS45650.1, EDS29594.1, EDS45861.1, EDS41047.1, EDS29589.1, EDS33237.1, EDS34667.1, EDS45649.1, EDS36717.1, EDS43223.1, EDS45038.1, EDS36715.1, EDS43232.1, EDS29493.1, EDS36710.1, EDS45648.1, EDS41650.1, EDS45033.1, EDS36712.1, EDS33236.1, EDS29596.1, EDS29495.1, EDS29494.1, EDS29597.1, EDS43229.1, EDS36711.1, EDS33254.1, EDS29591.1, EDS43228.1, EDS43226.1, EDS29600.1, EDS43231.1
Culex quinquefasciatus CQUIN 42 CPIJ015962-PA, CPIJ015959-PA, CPIJ007095-PA, CPIJ000929-PA, CPIJ015963-PA, CPIJ007085-PA, CPIJ014730-PA, CPIJ010810-PA, CPIJ007092-PA, CPIJ017199-PA, CPIJ015961-PA, CPIJ009587-PA, CPIJ011841-PA, CPIJ007084-PA, CPIJ017198-PA, CPIJ011636-PA, CPIJ006951-PA, CPIJ000925-PA, CPIJ006950-PA, CPIJ007091-PA, CPIJ011838-PA, CPIJ009569-PA, CPIJ015957-PA, CPIJ015954-PA, CPIJ009570-PA, CPIJ011835-PA, CPIJ017021-PA, CPIJ011837-PA, CPIJ007093-PA, CPIJ015318-PA, CPIJ015960-PA, CPIJ005683-PA, CPIJ006952-PA, CPIJ015958-PA, CPIJ007089-PA, CPIJ000924-PA, CPIJ010272-PA, CPIJ011843-PA, CPIJ011836-PA, CPIJ017200-PA, CPIJ007090-PA, CPIJ007086-PA
Anopheles atroparvus AATRO 15 AATE020430-PA, AATE003789-PA, AATE013909-PA, AATE001093-PA, AATE018743-PA, AATE021176-PA, AATE016490-PA, AATE004289-PA, AATE021203-PA, AATE006450-PA, AATE017197-PA, AATE010134-PA, AATE002297-PA, AATE012234-PA, AATE020352-PA
Anopheles sinensis china ASINEC 12 ASIC021402-PA, ASIC011737-PA, ASIC020209-PA, ASIC020206-PA, ASIC009004-PA, ASIC020205-PA, ASIC020208-PA, ASIC010843-PA, ASIC021538-PA, ASIC011736-PA, ASIC010842-PA, ASIC011735-PA
Anopheles dirus ADIRU 10 ADIR002447-PA, ADIR008975-PA, ADIR008964-PA, ADIR008965-PA, ADIR008963-PA, ADIR008974-PA, ADIR005803-PA, ADIR008968-PA, ADIR010309-PA, ADIR008967-PA
Anopheles farauti AFARA 13 AFAF003990-PA, AFAF021808-PA, AFAF014264-PA, AFAF005841-PA, AFAF001616-PA, AFAF002650-PA, AFAF017049-PA, AFAF011561-PA, AFAF003638-PA, AFAF011778-PA, AFAF006606-PA, AFAF001950-PA, AFAF005658-PA
Anopheles epiroticus AEPIR 10 AEPI000245-PA, AEPI001811-PA, AEPI001057-PA, AEPI000244-PA, AEPI015055-PA, AEPI001810-PA, AEPI000241-PA, AEPI000288-PA, AEPI015056-PA, AEPI001823-PA
Anopheles christyi ACHRI 5 ACHR008851-PA, ACHR003517-PA, ACHR004373-PA, ACHR009146-PA, ACHR002998-PA
Anopheles merus AMERU 11 AMEM008549-PA, AMEM002365-PA, AMEM000980-PA, AMEM006870-PA, AMEM013507-PA, AMEM003327-PA, AMEM009243-PA, AMEM005906-PA, AMEM007281-PA, AMEM002871-PA, AMEM018401-PA
Anopheles melas AMELA 11 AMEC010839-PA, AMEC008266-PA, AMEC004585-PA, AMEC018926-PA, AMEC002431-PA, AMEC005157-PA, AMEC000204-PA, AMEC009142-PA, AMEC007781-PA, AMEC020682-PA, AMEC002840-PA
Anopheles arabiensis AARAB 16 AARA015767-PA, AARA006732-PA, AARA000926-PA, AARA006730-PA, AARA001894-PA, AARA015768-PA, AARA006801-PA, AARA006738-PA, AARA003633-PA, AARA004308-PA, AARA003630-PA, AARA015766-PA, AARA003631-PA, AARA006739-PB, AARA006737-PA, AARA006731-PA
Anopheles coluzzii ACOLU 12 ACOM042031-PA, ACOM040396-PA, ACOM029280-PA, ACOM029209-PA, ACOM042051-PA, ACOM042046-PA, ACOM042149-PA, ACOM036812-PA, ACOM034138-PA, ACOM042029-PA, ACOM040414-PA, ACOM042045-PA
Anopheles coluzzii ngousso ACOLUN 16 ACON002207-PA, ACON002195-PA, ACON002209-PA, ACON002204-PA, ACON002138-PA, ACON002208-PA, ACON002202-PA, ACON002210-PA, ACON002206-PA, ACON002555-PA, ACON009696-PA, ACON002196-PA, ACON002197-PA, ACON001443-PA, ACON002205-PA, ACON002211-PA
Anopheles gambiae AGAMB 16 AGAP002209-PA, AGAP002208-PA, AGAP002211-PA, AGAP001443-PA, AGAP002555-PA, AGAP009696-PA, AGAP002210-PA, AGAP002195-PA, AGAP002197-PA, AGAP002205-PA, AGAP002204-PA, AGAP002138-PA, AGAP002207-PA, AGAP002202-PA, AGAP002196-PA, AGAP002206-PA
Anopheles quadriannulatus AQUAD 16 AQUA016018-PA, AQUA006948-PA, AQUA004237-PA, AQUA008972-PA, AQUA008693-PA, AQUA016017-PA, AQUA004236-PA, AQUA002931-PA, AQUA004234-PA, AQUA002929-PA, AQUA006623-PA, AQUA004235-PA, AQUA002923-PA, AQUA002930-PA, AQUA002922-PA, AQUA002924-PA
Anopheles minimus AMINI 9 AMIN016175-PA, AMIN002564-PA, AMIN003126-PA, AMIN003066-PA, AMIN003057-PA, AMIN016174-PA, AMIN003059-PA, AMIN003058-PA, AMIN003256-PA
Anopheles culicifacies ACULI 10 ACUA001170-PA, ACUA025899-PA, ACUA025197-PA, ACUA007769-PA, ACUA027536-PA, ACUA026345-PA, ACUA016517-PA, ACUA022823-PA, ACUA005112-PA, ACUA019822-PA
Anopheles funestus AFUNE 20 AFUN019218-PA, AFUN019348-PA, AFUN015830-PA, AFUN015930-PA, AFUN005103-PA, AFUN019672-PA, AFUN019523-PA, AFUN019517-PA, AFUN019478-PA, AFUN005102-PA, AFUN009115-PA, AFUN019288-PA, AFUN005101-PA, AFUN015832-PA, AFUN015967-PA, AFUN015831-PA, AFUN019378-PA, AFUN015966-PA, AFUN007717-PA, AFUN019268-PA
Anopheles stephensi indian ASTEPI 8 ASTEI00589-PA, ASTEI00597-PA, ASTEI00596-PA, ASTEI00537-PA, ASTEI00590-PA, ASTEI00598-PA, ASTEI03636-PA, ASTEI10723-PA
Anopheles stephensi ASTEP 11 ASTE004501-PA, ASTE011200-PA, ASTE015959-PA, ASTE004507-PA, ASTE001621-PA, ASTE015939-PA, ASTE015957-PA, ASTE002422-PA, ASTE004508-PA, ASTE004509-PA, ASTE015958-PA
Anopheles albimanus AALBI 11 AALB008278-PA, AALB008277-PA, AALB008125-PA, AALB015560-PA, AALB003569-PA, AALB003570-PA, AALB015561-PA, AALB003568-PA, AALB015669-PA, AALB008236-PA, AALB003571-PA
Anopheles darlingi ADARL 8 ADAC006992-PA, ADAC002907-PA, ADAC000552-PA, ADAC001791-PA, ADAC006991-PA, ADAC000796-PA, ADAC005164-PA, ADAC008108-PA
Drosophila willistoni DWILL 5 FBpp0378931, FBpp0374696, FBpp0379097, FBpp0374199, FBpp0243217
Drosophila pseudoobscura DPSEU 5 FBpp0284161, FBpp0283436, FBpp0281455, FBpp0283435, FBpp0281456
Drosophila persimilis DPERS 5 FBpp0188611, FBpp0191445, FBpp0185669, FBpp0185670, FBpp0191446
Drosophila ananassae DANAN 9 FBpp0351439, FBpp0341894, FBpp0341405, FBpp0119525, FBpp0351557, FBpp0348831, FBpp0342848, FBpp0120927, FBpp0350190
Drosophila melanogaster DMELA 6 FBpp0300785, FBpp0082413, FBpp0081379, FBpp0082136, FBpp0082086, FBpp0082088
Drosophila sechellia DSECH 5 FBpp0207506, FBpp0207810, FBpp0207505, FBpp0207468, FBpp0205644
Drosophila simulans DSIMU 5 FBpp0218953, FBpp0217366, FBpp0327199, FBpp0218988, FBpp0316514
Drosophila erecta DEREC 6 FBpp0135985, FBpp0135692, FBpp0135694, FBpp0135404, FBpp0135691, FBpp0135653
Drosophila yakuba DYAKU 6 FBpp0269547, FBpp0269546, FBpp0269850, FBpp0269545, FBpp0269506, FBpp0269249
Drosophila virilis DVIRI 3 FBpp0224475, FBpp0238474, FBpp0225456
Drosophila mojavensis DMOJA 2 FBpp0387213, FBpp0159451
Drosophila grimshawi DGRIM 4 FBpp0153497, FBpp0149295, FBpp0156825, FBpp0418838
Lucilia cuprina LCUPR 7 KNC21964, KNC20935, KNC22895, KNC32061, KNC25918, KNC34531, KNC21583
Musca domestica MDOME 10 MDOA004876-PA, MDOA013105-PA, MDOA004971-PA, MDOA010004-PA, MDOA013529-PB, MDOA016498-PA, MDOA009460-PB, MDOA014054-PA, MDOA001593-PB, MDOA012173-PB
Stomoxys calcitrans SCALC 11 SCAU004529-PA, SCAU016338-PA, SCAU006738-PA, SCAU014181-PA, SCAU011608-PA, SCAU003278-PA, SCAU014479-PA, SCAU003738-PA, SCAU002272-PA, SCAU010233-PD, SCAU015034-PB
Glossina brevipalpis GBREV 3 GBRI005737-PA, GBRI000159-PA, GBRI040742-PA
Glossina palpalis GPALP 2 GPPI017310-PA, GPPI008498-PA
Glossina austeni GAUST 3 GAUT035044-PA, GAUT046103-PA, GAUT040456-PA
Glossina pallidipes GPALL 1 GPAI004060-PA
Glossina morsitans GMORS 3 GMOY012351-PA, GMOY004393-PA, GMOY011400-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g1225.t1) is OG0000155. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN2776_c0_g1_i3.p1, TRINITY_DN32634_c1_g1_i1.p1, TRINITY_DN85_c0_g1_i16.p1
Parochlus steinenii PSTEI PSG12721
Trissopelopia nemorum TNEMO TRINITY_DN38828_c0_g1_i1.p1, TRINITY_DN6143_c0_g1_i2.p1, TRINITY_DN4824_c0_g4_i1.p1, TRINITY_DN17095_c0_g2_i1.p1, TRINITY_DN615_c0_g8_i1.p1, TRINITY_DN5397_c0_g1_i10.p1, TRINITY_DN49555_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN9244_c0_g1_i5.p1, TRINITY_DN1560_c0_g1_i3.p1, TRINITY_DN24165_c0_g1_i1.p1, TRINITY_DN19141_c0_g1_i1.p1, TRINITY_DN8042_c0_g1_i1.p1, TRINITY_DN12736_c0_g1_i1.p2, TRINITY_DN1684_c0_g2_i4.p1
Telmatogeton pecinata TPECI TRINITY_DN3908_c0_g1_i3.p1, TRINITY_DN29563_c0_g1_i1.p1, TRINITY_DN16641_c0_g1_i11.p1, TRINITY_DN398_c0_g4_i2.p1, TRINITY_DN14199_c0_g1_i1.p1, TRINITY_DN0_c8111_g1_i1.p1, TRINITY_DN2703_c0_g1_i2.p1, TRINITY_DN72140_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN14572_c0_g1_i1.p1, TRINITY_DN2898_c0_g1_i2.p1, TRINITY_DN63608_c0_g1_i1.p1, TRINITY_DN14672_c0_g1_i1.p1, TRINITY_DN7336_c0_g1_i1.p1, TRINITY_DN34391_c0_g1_i1.p1
Clunio marinus CMARI CRL05090.1, CRK99682.1, CRK92409.1, CRK99374.1, CRL03272.1
Cardiocladius sp CARDI TRINITY_DN10501_c0_g1_i6.p1, TRINITY_DN25455_c0_g1_i9.p1, TRINITY_DN2949_c0_g1_i14.p1
Belgica antarctica BANTA IU25_09944-mRNA-1, IU25_06876-mRNA-1, IU25_09943-mRNA-1, IU25_08876-mRNA-1, IU25_03007-mRNA-1, IU25_06875-mRNA-1, IU25_03006-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN67310_c0_g1_i1.p1, TRINITY_DN239554_c0_g1_i1.p1, TRINITY_DN18867_c0_g1_i4.p1, TRINITY_DN38179_c0_g1_i1.p1, TRINITY_DN178041_c0_g1_i1.p2, TRINITY_DN18867_c0_g2_i1.p1, TRINITY_DN5189_c0_g1_i7.p1, TRINITY_DN8518_c0_g1_i6.p1, TRINITY_DN192891_c0_g1_i1.p2
Chironomus riparius CRIPA g10390.t1, g10389.t1, g4636.t1, g7354.t1
Chironomus columbiensis CCOLU TRINITY_DN14077_c0_g1_i1.p1, TRINITY_DN35903_c0_g1_i1.p1, TRINITY_DN3572_c0_g1_i2.p1, TRINITY_DN8520_c1_g1_i5.p1, TRINITY_DN3572_c0_g2_i2.p1, TRINITY_DN1839_c0_g1_i1.p1
Chironomus tentans CTENT g11876.t1, g9921.t1, g11156.t1, g7648.t1, g5286.t1, g5285.t1, g14535.t1
Chironomus dilutus CDILU TRINITY_DN17186_c0_g1_i1.p1, TRINITY_DN1877_c0_g1_i1.p1, TRINITY_DN1053_c2_g1_i3.p1, TRINITY_DN2826_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.00462, Pn.01152, Pn.12660, Pn.01227
Polypedilum vanderplanki PVAND g11037.t1, g12352.t1, g1225.t1, g11042.t1, g11039.t1
Polypedilum pembai PPEMB g7959.t1, g11109.t1, g11458.t1, g10702.t1, g9691.t1
Culicoides sonorensis CSONO CSON006010-1, CSON006017-1, CSON006007-1, CSON013790-1, CSON003582-1, CSON003102-1
Aedes aegypti lvpagwg AAEGYL AAEL005788-PA, AAEL020266-PA, AAEL012761-PA, AAEL017136-PB, AAEL006044-PA, AAEL000357-PA, AAEL019659-PA, AAEL024573-PA, AAEL005700-PA, AAEL006058-PA, AAEL005695-PA, AAEL005775-PA, AAEL000326-PB, AAEL000320-PA, AAEL005696-PB, AAEL017215-PB, AAEL000338-PB, AAEL019910-PA
Anopheles gambiae AGAMB AGAP002209-PA, AGAP002208-PA, AGAP002205-PA, AGAP002211-PA, AGAP002204-PA, AGAP002555-PA, AGAP009696-PA, AGAP002210-PA, AGAP002207-PA, AGAP002202-PA, AGAP002206-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation