Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12752 g12752.t2 TSS g12752.t2 25765520 25765520
chr_1 g12752 g12752.t2 isoform g12752.t2 25765521 25766500
chr_1 g12752 g12752.t2 exon g12752.t2.exon1 25765521 25766500
chr_1 g12752 g12752.t2 cds g12752.t2.CDS1 25766040 25766498
chr_1 g12752 g12752.t2 TTS g12752.t2 25767113 25767113

Sequences

>g12752.t2 Gene=g12752 Length=980
AGTCTTGACGAATTTTTCATTGAAAACGGATCGAAAAGAAGTCAAAAAGAAAGAAAAAAG
TCGTGCGGGAAGAAAAAGAATTTTAGATAAAAATAGAAAATTATAAAAATAATTTGTTAA
GATTTGTTGATAATTTTTTTGAAAGTTAAACTCCAGTAAAAATTTTAAGGAAATTTTTTA
AACTATCGCGATAATTAGTGAAAAGAAAATTAATTTTCTTTTAAAAAAAAGTTCCCACGG
ATTTGAAGAAAAGAAAATATTTTTACATTTTCTTGATACCGATCCAACAGACACAGTAGC
AAAGTGAGAGAACTTATGATGCTTATGAGAAAAGAAGAAGAATCCTTTATGTGAAAAAGA
AAGAAATATAGATAGGGCGATACGTAATATTTTTCTGTGTTTCGCGAAATATAATAAATT
TCATCTATCGCAGCAGTAACAGCTTGTGCTGTGTGAGAAAGTAAAAACACAGACAGGAGA
CCTTCAAATTTATTCTTGTCCATTATTAAATCAGCAAAAATGCCTCTCTATTCTGATATG
TATTACAATTATATCAATCCACTGTCGTCATCTACTAGTAATTATTCTTCAAATCCACCT
AGTTATGGATCTAGTTCTTCCAATTATTCTTCTTTGTCTTATACACCTTCATTACGTAGT
GGTGTCACAAGTACTCGATTTTTACCCAAATTAACAACTATATCAGAAACACCGCTTACA
AAACATCGAATTGCTGCCTTGACACGCATCGCTGCATCTACGCCAAAATATATTCCACCT
CGACCGCGTCACATTGACACATCACAAATTGACGTATCGGCCAATCGCTTTGGCAATCGT
CGCAAGCAAACAATTAATGAAAATGAACAGATCAAAGTGCAGCGAATGCATGATTCGAAT
GATGAAAATCCCTCAGGCGCTCGTAGCACAATTAGACGTGATCGTGGACTTGTGCGGCTT
AGAACAATTCATATGCCAAA

>g12752.t2 Gene=g12752 Length=153
MPLYSDMYYNYINPLSSSTSNYSSNPPSYGSSSSNYSSLSYTPSLRSGVTSTRFLPKLTT
ISETPLTKHRIAALTRIAASTPKYIPPRPRHIDTSQIDVSANRFGNRRKQTINENEQIKV
QRMHDSNDENPSGARSTIRRDRGLVRLRTIHMP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g12752.t2 MobiDBLite mobidb-lite consensus disorder prediction 122 143 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed