Gene loci information

Isoforms of this gene

  • There are 3 isoforms that are expressed from this gene.
  • The longest transcript is g12752.t1
  • List of isoforms

g12752.t1, g12752.t2, g12752.t3

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g12752.t1) is OG0000063. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 7 XP_012062953.1, XP_012057639.1, XP_012060433.1, XP_012058802.1, XP_012060629.1, XP_012063901.1, XP_012058906.1
Apis mellifera AMELL 7 GB43135-PA, GB41862-PA, GB43222-PA, GB42064-PA, GB42063-PA, GB41860-PA, GB47743-PA
Culicoides sonorensis CSONO 5 CSON003246-1, CSON010624-1, CSON014807-2, CSON007437-1, CSON003316-2
Polypedilum nubifer PNUBI 7 Pn.16676, Pn.08943, Pn.12528, Pn.16338, Pn.16318, Pn.01868, Pn.09032
Polypedilum vanderplanki PVAND 8 g11019.t1, g5649.t1, g12754.t1, g9654.t1, g11524.t1, g11018.t4, g12752.t1, g14087.t1
Polypedilum pembai PPEMB 8 g11240.t1, g13544.t1, g148.t1, g744.t1, g8270.t1, g1213.t1, g11968.t1, g7563.t1
Belgica antarctica BANTA 3 IU25_05141-mRNA-1, IU25_06112-mRNA-1, IU25_02301-mRNA-1
Clunio marinus CMARI 5 CRK99307.1, CRK99016.1, CRK98781.1, CRL01744.1, CRL04082.1
Aedes aegypti lvpagwg AAEGYL 5 AAEL019843-PH, AAEL008823-PA, AAEL009466-PB, AAEL000810-PB, AAEL019951-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 10 EDS40256.1, EDS30043.1, EDS32697.1, EDS45706.1, EDS32379.1, EDS38639.1, EDS27502.1, EDS29954.1, EDS30042.1, EDS28490.1
Culex quinquefasciatus CQUIN 10 CPIJ018495-PA, CPIJ013331-PA, CPIJ005701-PA, CPIJ006329-PA, CPIJ019407-PA, CPIJ019937-PA, CPIJ019408-PA, CPIJ007754-PA, CPIJ020037-PA, CPIJ013835-PA
Anopheles atroparvus AATRO 6 AATE018169-PA, AATE000033-PA, AATE014376-PA, AATE020586-PA, AATE003712-PA, AATE002558-PA
Anopheles sinensis china ASINEC 7 ASIC013049-PA, ASIC008777-PA, ASIC021398-PA, ASIC008776-PA, ASIC006275-PA, ASIC022329-PA, ASIC006276-PA
Anopheles dirus ADIRU 6 ADIR009553-PA, ADIR001173-PA, ADIR009909-PA, ADIR004367-PA, ADIR001170-PA, ADIR014781-PA
Anopheles farauti AFARA 6 AFAF013705-PA, AFAF017493-PA, AFAF001031-PA, AFAF006766-PA, AFAF017768-PA, AFAF018693-PA
Anopheles epiroticus AEPIR 5 AEPI000693-PA, AEPI000668-PA, AEPI004341-PA, AEPI002002-PA, AEPI000669-PA
Anopheles christyi ACHRI 5 ACHR002605-PA, ACHR008163-PA, ACHR010147-PA, ACHR010059-PA, ACHR009972-PA
Anopheles merus AMERU 6 AMEM012618-PA, AMEM004657-PA, AMEM014919-PA, AMEM014862-PA, AMEM000448-PA, AMEM014152-PA
Anopheles melas AMELA 7 AMEC019007-PA, AMEC012326-PA, AMEC021279-PA, AMEC000548-PA, AMEC000305-PA, AMEC003682-PA, AMEC001937-PA
Anopheles arabiensis AARAB 6 AARA017689-PA, AARA000773-PA, AARA016788-PA, AARA010697-PA, AARA016842-PA, AARA004095-PA
Anopheles coluzzii ACOLU 5 ACOM034650-PA, ACOM042131-PA, ACOM023426-PA, ACOM026368-PA, ACOM036420-PA
Anopheles coluzzii ngousso ACOLUN 6 ACON029538-PB, ACON029239-PA, ACON012252-PA, ACON029244-PA, ACON002748-PA, ACON002161-PA
Anopheles gambiae AGAMB 6 AGAP029239-PA, AGAP012252-PA, AGAP002748-PA, AGAP029538-PC, AGAP029244-PA, AGAP002161-PA
Anopheles quadriannulatus AQUAD 6 AQUA015016-PA, AQUA008656-PA, AQUA001787-PA, AQUA001786-PA, AQUA009786-PA, AQUA007794-PA
Anopheles minimus AMINI 6 AMIN014281-PA, AMIN006915-PA, AMIN005705-PA, AMIN004407-PA, AMIN003564-PA, AMIN005710-PA
Anopheles culicifacies ACULI 7 ACUA009065-PA, ACUA010119-PA, ACUA015782-PA, ACUA012022-PA, ACUA017702-PA, ACUA022695-PA, ACUA020883-PA
Anopheles funestus AFUNE 5 AFUN014536-PA, AFUN020206-PC, AFUN020523-PA, AFUN020033-PB, AFUN016344-PA
Anopheles stephensi indian ASTEPI 4 ASTEI05881-PA, ASTEI02448-PA, ASTEI03156-PA, ASTEI06256-PA
Anopheles stephensi ASTEP 4 ASTE008485-PA, ASTE006927-PA, ASTE011627-PA, ASTE011624-PA
Anopheles albimanus AALBI 5 AALB006313-PA, AALB010180-PA, AALB002391-PA, AALB010657-PA, AALB006314-PA
Anopheles darlingi ADARL 6 ADAC000350-PA, ADAC003782-PA, ADAC000760-PA, ADAC005513-PA, ADAC003781-PA, ADAC002326-PA
Drosophila willistoni DWILL 7 FBpp0251175, FBpp0378526, FBpp0242403, FBpp0242405, FBpp0251173, FBpp0378936, FBpp0245636
Drosophila pseudoobscura DPSEU 6 FBpp0332633, FBpp0273337, FBpp0277776, FBpp0301270, FBpp0277775, FBpp0335488
Drosophila persimilis DPERS 5 FBpp0175678, FBpp0175676, FBpp0188356, FBpp0189351, FBpp0176327
Drosophila ananassae DANAN 6 FBpp0351084, FBpp0350220, FBpp0119462, FBpp0350184, FBpp0114615, FBpp0344301
Drosophila melanogaster DMELA 6 FBpp0086197, FBpp0309085, FBpp0082682, FBpp0084728, FBpp0302921, FBpp0086196
Drosophila sechellia DSECH 6 FBpp0203215, FBpp0205761, FBpp0194233, FBpp0193039, FBpp0201641, FBpp0203217
Drosophila simulans DSIMU 6 FBpp0209635, FBpp0328202, FBpp0219807, FBpp0217476, FBpp0315325, FBpp0209634
Drosophila erecta DEREC 6 FBpp0364900, FBpp0130180, FBpp0139190, FBpp0136265, FBpp0135524, FBpp0139191
Drosophila yakuba DYAKU 6 FBpp0357406, FBpp0360075, FBpp0256640, FBpp0256843, FBpp0354734, FBpp0268834
Drosophila virilis DVIRI 6 FBpp0393174, FBpp0400838, FBpp0235433, FBpp0231296, FBpp0396437, FBpp0235432
Drosophila mojavensis DMOJA 6 FBpp0383795, FBpp0381348, FBpp0171872, FBpp0170858, FBpp0170379, FBpp0170380
Drosophila grimshawi DGRIM 6 FBpp0417199, FBpp0411813, FBpp0407984, FBpp0151472, FBpp0156555, FBpp0419023
Lucilia cuprina LCUPR 8 KNC27080, KNC27553, KNC33448, KNC27555, KNC31888, KNC33392, KNC21657, KNC21747
Musca domestica MDOME 6 MDOA013451-PE, MDOA011531-PB, MDOA004052-PB, MDOA002435-PA, MDOA000338-PB, MDOA008448-PB
Stomoxys calcitrans SCALC 6 SCAU005847-PA, SCAU008077-PE, SCAU011582-PA, SCAU010076-PB, SCAU003188-PA, SCAU006388-PD
Glossina brevipalpis GBREV 9 GBRI034249-PA, GBRI022639-PA, GBRI031572-PA, GBRI021919-PA, GBRI033637-PA, GBRI034248-PA, GBRI003995-PA, GBRI009863-PA, GBRI034247-PA
Glossina palpalis GPALP 9 GPPI039740-PA, GPPI042026-PA, GPPI033574-PA, GPPI013150-PA, GPPI013145-PA, GPPI051075-PA, GPPI013152-PA, GPPI050573-PA, GPPI023958-PA
Glossina austeni GAUST 8 GAUT031769-PA, GAUT050488-PA, GAUT042630-PA, GAUT042636-PA, GAUT049218-PA, GAUT050511-PA, GAUT042629-PA, GAUT044479-PA
Glossina pallidipes GPALL 9 GPAI020374-PA, GPAI028639-PA, GPAI028630-PA, GPAI043909-PA, GPAI037822-PA, GPAI043908-PA, GPAI028758-PA, GPAI043910-PA, GPAI004345-PA
Glossina morsitans GMORS 6 GMOY012181-PA, GMOY005802-PA, GMOY004974-PA, GMOY004136-PA, GMOY001293-PA, GMOY010009-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g12752.t1) is OG0003719. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN12670_c0_g1_i2.p4, TRINITY_DN7699_c0_g1_i10.p1, TRINITY_DN111025_c0_g1_i1.p2
Parochlus steinenii PSTEI PSG01155, PSG06985
Trissopelopia nemorum TNEMO TRINITY_DN2946_c0_g1_i5.p1, TRINITY_DN2946_c0_g5_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN26280_c0_g1_i1.p1, TRINITY_DN30989_c0_g1_i1.p1, TRINITY_DN9599_c0_g1_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN290_c0_g4_i4.p1, TRINITY_DN7968_c0_g1_i2.p1, TRINITY_DN0_c8776_g1_i3.p1
Cricotopus draysoni CDRAY TRINITY_DN102056_c0_g1_i1.p1, TRINITY_DN84065_c0_g1_i1.p1
Clunio marinus CMARI CRL04082.1
Cardiocladius sp CARDI none
Belgica antarctica BANTA IU25_02299-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN6428_c0_g1_i1.p2, TRINITY_DN8782_c0_g1_i4.p1, TRINITY_DN236770_c0_g1_i1.p1
Chironomus riparius CRIPA g6913.t1, g13048.t1
Chironomus columbiensis CCOLU TRINITY_DN21697_c0_g1_i1.p3, TRINITY_DN15500_c0_g1_i2.p1
Chironomus tentans CTENT g17513.t1
Chironomus dilutus CDILU none
Polypedilum nubifer PNUBI Pn.16676, Pn.08018
Polypedilum vanderplanki PVAND g12752.t1
Polypedilum pembai PPEMB g8416.t1
Culicoides sonorensis CSONO CSON008519-1
Aedes aegypti lvpagwg AAEGYL none
Anopheles gambiae AGAMB AGAP029244-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation