Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Fatty acid hydroxylase domain-containing protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12951 g12951.t2 isoform g12951.t2 27105873 27106750
chr_1 g12951 g12951.t2 exon g12951.t2.exon1 27105873 27105999
chr_1 g12951 g12951.t2 cds g12951.t2.CDS1 27105873 27105999
chr_1 g12951 g12951.t2 exon g12951.t2.exon2 27106057 27106204
chr_1 g12951 g12951.t2 cds g12951.t2.CDS2 27106057 27106204
chr_1 g12951 g12951.t2 exon g12951.t2.exon3 27106262 27106508
chr_1 g12951 g12951.t2 cds g12951.t2.CDS3 27106262 27106508
chr_1 g12951 g12951.t2 exon g12951.t2.exon4 27106562 27106750
chr_1 g12951 g12951.t2 cds g12951.t2.CDS4 27106562 27106750
chr_1 g12951 g12951.t2 TSS g12951.t2 27106938 27106938
chr_1 g12951 g12951.t2 TTS g12951.t2 NA NA

Sequences

>g12951.t2 Gene=g12951 Length=711
ATGGATAAGTTTGGAGATAATGAAGCTTTATACATCATTTGGGGTATAAATTTCTTAACA
TTTGGAATATATTGGATATTAGGAGGATTTTTTTATGTTATGGAAACTTTCAATAAACCA
AAAACTTTAGAATTGTATAAAATTCAACCAAACAAAAGTGAAATTAAAAAGGGAAATAAC
TTCAGTAAAGTAATCCAAGTTGTTATCAGAAATCAAGTTATCTCATTATTGCTATTAATA
TTCGTCTACTATCAAGGTTCAAATTTTCTTAAAATTCGAGTTACTCGAGATGTACCAAGT
TTTGCGGTTACAATGCGTGATATGTTAGTTTGTTTCTTCTGCCAAGAAACATTCTTTTAT
TATTCACATCGATTATTACACACAAAATATTTTTATCGATGGCATAAACAACATCATGAA
TATTCTACACCTGTCTTTGTGATTGGATTAAGATTTATGGAAGCTCACATAACGACTGCT
TATTTATGGTTGACTATTGTTTTAGTAACGACTTTAAACGACCATTCAGGCCATCATCTA
CCGTTTCTACACAGCTCTGAACTACATGATTATCATCATTTAAAATTCAATGTAAACTTT
TCTGTTTACGGATTTCTTGATAAACTTCACAACACATATGGGCATTTTGAAAAATCAAAA
CAATTCGAACGTCATCGAACTCTTTTTTCTCTTAGTCCGATTGAGAAATAA

>g12951.t2 Gene=g12951 Length=236
MDKFGDNEALYIIWGINFLTFGIYWILGGFFYVMETFNKPKTLELYKIQPNKSEIKKGNN
FSKVIQVVIRNQVISLLLLIFVYYQGSNFLKIRVTRDVPSFAVTMRDMLVCFFCQETFFY
YSHRLLHTKYFYRWHKQHHEYSTPVFVIGLRFMEAHITTAYLWLTIVLVTTLNDHSGHHL
PFLHSSELHDYHHLKFNVNFSVYGFLDKLHNTYGHFEKSKQFERHRTLFSLSPIEK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g12951.t2 PANTHER PTHR11863:SF26 FATTY ACID HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2 4 145 1.2E-53
4 g12951.t2 PANTHER PTHR11863 STEROL DESATURASE 4 145 1.2E-53
1 g12951.t2 PANTHER PTHR11863:SF26 FATTY ACID HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2 147 235 1.2E-53
3 g12951.t2 PANTHER PTHR11863 STEROL DESATURASE 147 235 1.2E-53
8 g12951.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
10 g12951.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 33 -
7 g12951.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 34 63 -
11 g12951.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 64 84 -
9 g12951.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 85 236 -
6 g12951.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 10 32 -
5 g12951.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 67 86 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed