Gene loci information

Isoforms of this gene

  • There are 4 isoforms that are expressed from this gene.
  • The longest transcript is g12951.t1
  • List of isoforms

g12951.t1, g12951.t2, g12951.t3, g12951.t4

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g12951.t1) is OG0000094. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012063973.1
Apis mellifera AMELL 2 GB40899-PA, GB40773-PA
Culicoides sonorensis CSONO 8 CSON001212-1, CSON010391-1, CSON001211-1, CSON012443-1, CSON001210-1, CSON010392-1, CSON010393-1, CSON010488-1
Polypedilum nubifer PNUBI 8 Pn.00245, Pn.03092, Pn.00247, Pn.00246, Pn.01921, Pn.00242, Pn.00243, Pn.00244
Polypedilum vanderplanki PVAND 9 g12949.t1, g12947.t1, g12948.t1, g12946.t1, g12944.t1, g12951.t1, g12945.t1, g12912.t1, g12950.t1
Polypedilum pembai PPEMB 11 g10477.t1, g12475.t1, g10478.t1, g8370.t1, g8465.t1, g7935.t1, g7936.t1, g184.t1, g8371.t1, g12811.t1, g10479.t1
Belgica antarctica BANTA 7 IU25_03586-mRNA-1, IU25_00398-mRNA-1, IU25_11996-mRNA-1, IU25_12945-mRNA-1, IU25_11649-mRNA-1, IU25_00399-mRNA-1, IU25_02807-mRNA-1
Clunio marinus CMARI 5 CRK91267.1, CRL03991.1, CRK96634.1, CRK88576.1, CRL03989.1
Aedes aegypti lvpagwg AAEGYL 7 AAEL012297-PA, AAEL012425-PA, AAEL012422-PA, AAEL007741-PA, AAEL004126-PB, AAEL018110-PB, AAEL012298-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 10 EDS25948.1, EDS32830.1, EDS36138.1, EDS41054.1, EDS45666.1, EDS36139.1, EDS36030.1, EDS36140.1, EDS45665.1, EDS25947.1
Culex quinquefasciatus CQUIN 10 CPIJ017305-PA, CPIJ011630-PA, CPIJ017744-PA, CPIJ017745-PA, CPIJ011629-PA, CPIJ011628-PA, CPIJ011465-PA, CPIJ017306-PA, CPIJ014468-PA, CPIJ009637-PA
Anopheles atroparvus AATRO 9 AATE016701-PA, AATE014011-PA, AATE015827-PA, AATE010840-PA, AATE001827-PA, AATE007218-PA, AATE010807-PA, AATE017323-PA, AATE017458-PA
Anopheles sinensis china ASINEC 7 ASIC017137-PA, ASIC012495-PA, ASIC020499-PA, ASIC012494-PA, ASIC012491-PA, ASIC020497-PA, ASIC012493-PA
Anopheles dirus ADIRU 6 ADIR002836-PA, ADIR003548-PA, ADIR003547-PA, ADIR001039-PA, ADIR001038-PA, ADIR005214-PA
Anopheles farauti AFARA 10 AFAF001047-PA, AFAF009910-PA, AFAF005507-PA, AFAF009943-PA, AFAF001036-PA, AFAF004789-PA, AFAF011641-PA, AFAF018390-PA, AFAF011838-PA, AFAF006612-PA
Anopheles epiroticus AEPIR 7 AEPI005645-PA, AEPI005164-PA, AEPI007611-PA, AEPI005165-PA, AEPI005646-PA, AEPI005166-PA, AEPI005191-PA
Anopheles christyi ACHRI 3 ACHR007861-PA, ACHR002953-PA, ACHR008548-PA
Anopheles merus AMERU 8 AMEM000408-PA, AMEM004054-PA, AMEM004465-PA, AMEM015450-PA, AMEM002035-PA, AMEM016874-PA, AMEM003318-PA, AMEM011596-PA
Anopheles melas AMELA 10 AMEC006065-PA, AMEC018660-PA, AMEC010370-PA, AMEC008739-PA, AMEC008171-PA, AMEC001119-PA, AMEC004495-PA, AMEC018791-PA, AMEC020238-PA, AMEC014401-PA
Anopheles arabiensis AARAB 8 AARA017626-PA, AARA001079-PA, AARA017628-PA, AARA001080-PA, AARA001304-PA, AARA017571-PB, AARA011687-PA, AARA017627-PA
Anopheles coluzzii ACOLU 7 ACOM035454-PA, ACOM022660-PA, ACOM035459-PA, ACOM035455-PA, ACOM035446-PA, ACOM041662-PA, ACOM035682-PA
Anopheles coluzzii ngousso ACOLUN 7 ACON000091-PA, ACON002769-PA, ACON002766-PA, ACON000946-PA, ACON000092-PA, ACON002767-PB, ACON002765-PA
Anopheles gambiae AGAMB 8 AGAP000946-PA, AGAP000092-PA, AGAP002769-PA, AGAP002766-PA, AGAP002767-PB, AGAP002765-PA, AGAP003209-PA, AGAP000091-PA
Anopheles quadriannulatus AQUAD 6 AQUA009770-PA, AQUA008084-PA, AQUA009769-PA, AQUA009000-PA, AQUA002462-PA, AQUA002461-PA
Anopheles minimus AMINI 8 AMIN006291-PA, AMIN005056-PA, AMIN000775-PA, AMIN000777-PA, AMIN000776-PA, AMIN000661-PA, AMIN005057-PA, AMIN000774-PA
Anopheles culicifacies ACULI 7 ACUA021324-PA, ACUA010914-PA, ACUA027796-PA, ACUA010623-PA, ACUA005393-PA, ACUA011204-PA, ACUA006650-PA
Anopheles funestus AFUNE 8 AFUN001741-PA, AFUN021869-PA, AFUN021868-PA, AFUN006316-PA, AFUN008120-PA, AFUN001742-PA, AFUN021867-PA, AFUN006177-PA
Anopheles stephensi indian ASTEPI 6 ASTEI00381-PA, ASTEI06233-PA, ASTEI11182-PA, ASTEI06234-PA, ASTEI00031-PA, ASTEI00030-PA
Anopheles stephensi ASTEP 6 ASTE004257-PA, ASTE007138-PA, ASTE011649-PA, ASTE008570-PA, ASTE007139-PA, ASTE011648-PA
Anopheles albimanus AALBI 4 AALB008111-PA, AALB003330-PA, AALB009543-PA, AALB006617-PA
Anopheles darlingi ADARL 8 ADAC008373-PA, ADAC000666-PA, ADAC008367-PA, ADAC008374-PA, ADAC007343-PA, ADAC008364-PA, ADAC000033-PA, ADAC007345-PA
Drosophila willistoni DWILL 2 FBpp0376107, FBpp0255004
Drosophila pseudoobscura DPSEU 2 FBpp0285493, FBpp0272251
Drosophila persimilis DPERS 2 FBpp0186751, FBpp0191110
Drosophila ananassae DANAN 2 FBpp0125004, FBpp0125615
Drosophila melanogaster DMELA 2 FBpp0073642, FBpp0073618
Drosophila sechellia DSECH 1 FBpp0192968
Drosophila simulans DSIMU 2 FBpp0328509, FBpp0214288
Drosophila erecta DEREC 2 FBpp0136347, FBpp0138051
Drosophila yakuba DYAKU 2 FBpp0261169, FBpp0262107
Drosophila virilis DVIRI 2 FBpp0233756, FBpp0233757
Drosophila mojavensis DMOJA 2 FBpp0163815, FBpp0163818
Drosophila grimshawi DGRIM 2 FBpp0157952, FBpp0157953
Lucilia cuprina LCUPR 2 KNC22065, KNC21271
Musca domestica MDOME 4 MDOA005393-PA, MDOA016566-PA, MDOA005938-PA, MDOA013338-PA
Stomoxys calcitrans SCALC 3 SCAU016513-PA, SCAU011780-PA, SCAU003138-PA
Glossina brevipalpis GBREV 1 GBRI038209-PA
Glossina palpalis GPALP 1 GPPI015281-PA
Glossina austeni GAUST 2 GAUT048804-PA, GAUT048802-PA
Glossina pallidipes GPALL 2 GPAI007986-PA, GPAI007982-PA
Glossina morsitans GMORS 1 GMOY005287-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g12951.t1) is OG0005574. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN147918_c0_g1_i1.p2, TRINITY_DN109219_c0_g1_i1.p1
Parochlus steinenii PSTEI none
Trissopelopia nemorum TNEMO none
Paraheptagyia tonnoiri PTONN none
Telmatogeton pecinata TPECI none
Cricotopus draysoni CDRAY TRINITY_DN3666_c0_g1_i1.p1
Clunio marinus CMARI CRK88576.1, CRL03989.1
Cardiocladius sp CARDI none
Belgica antarctica BANTA IU25_00398-mRNA-1, IU25_11996-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN59933_c0_g1_i1.p1
Chironomus riparius CRIPA g2631.t1, g16002.t1, g180.t1
Chironomus columbiensis CCOLU TRINITY_DN11005_c0_g1_i1.p1, TRINITY_DN19592_c0_g1_i1.p1, TRINITY_DN7182_c0_g1_i1.p1, TRINITY_DN6658_c0_g1_i3.p1
Chironomus tentans CTENT g16180.t1, g1266.t1, g1822.t1
Chironomus dilutus CDILU TRINITY_DN7335_c0_g1_i2.p1, TRINITY_DN3779_c0_g2_i6.p1, TRINITY_DN24568_c0_g1_i1.p1, TRINITY_DN1435_c0_g1_i2.p1
Polypedilum nubifer PNUBI none
Polypedilum vanderplanki PVAND g14165.t1, g12951.t1
Polypedilum pembai PPEMB g13589.t1, g8465.t1
Culicoides sonorensis CSONO none
Aedes aegypti lvpagwg AAEGYL none
Anopheles gambiae AGAMB none

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation