Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Fatty acid hydroxylase domain-containing protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12951 g12951.t4 isoform g12951.t4 27106057 27106750
chr_1 g12951 g12951.t4 exon g12951.t4.exon1 27106057 27106508
chr_1 g12951 g12951.t4 cds g12951.t4.CDS1 27106059 27106508
chr_1 g12951 g12951.t4 exon g12951.t4.exon2 27106562 27106750
chr_1 g12951 g12951.t4 cds g12951.t4.CDS2 27106562 27106750
chr_1 g12951 g12951.t4 TSS g12951.t4 27106938 27106938
chr_1 g12951 g12951.t4 TTS g12951.t4 NA NA

Sequences

>g12951.t4 Gene=g12951 Length=641
ATGGATAAGTTTGGAGATAATGAAGCTTTATACATCATTTGGGGTATAAATTTCTTAACA
TTTGGAATATATTGGATATTAGGAGGATTTTTTTATGTTATGGAAACTTTCAATAAACCA
AAAACTTTAGAATTGTATAAAATTCAACCAAACAAAAGTGAAATTAAAAAGGGAAATAAC
TTCAGTAAAGTAATCCAAGTTGTTATCAGAAATCAAGTTATCTCATTATTGCTATTAATA
TTCGTCTACTATCAAGGTTCAAATTTTCTTAAAATTCGAGTTACTCGAGATGTACCAAGT
TTTGCGGTTACAATGCGTGATATGTTAGTTTGTTTCTTCTGCCAAGAAACATTCTTTTAT
TATTCACATCGATTATTACACACAAAATATTTTTATCGATGGCATAAACAACATCATGAA
TATTCTACACCTGTCTGTATTACTGCAATTTATTGTGGAGTTTTCGAGCATATTTTTAGT
AATTTATTCCCAGTTGTGATTGGATTAAGATTTATGGAAGCTCACATAACGACTGCTTAT
TTATGGTTGACTATTGTTTTAGTAACGACTTTAAACGACCATTCAGGCCATCATCTACCG
TTTCTACACAGCTCTGAACTACATGATTATCATCATTTAAA

>g12951.t4 Gene=g12951 Length=213
MDKFGDNEALYIIWGINFLTFGIYWILGGFFYVMETFNKPKTLELYKIQPNKSEIKKGNN
FSKVIQVVIRNQVISLLLLIFVYYQGSNFLKIRVTRDVPSFAVTMRDMLVCFFCQETFFY
YSHRLLHTKYFYRWHKQHHEYSTPVCITAIYCGVFEHIFSNLFPVVIGLRFMEAHITTAY
LWLTIVLVTTLNDHSGHHLPFLHSSELHDYHHL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g12951.t4 PANTHER PTHR11863:SF26 FATTY ACID HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2 4 213 1.5E-52
3 g12951.t4 PANTHER PTHR11863 STEROL DESATURASE 4 213 1.5E-52
1 g12951.t4 Pfam PF04116 Fatty acid hydroxylase superfamily 108 212 3.2E-12
9 g12951.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
12 g12951.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 33 -
8 g12951.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 34 66 -
15 g12951.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 67 86 -
11 g12951.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 87 97 -
14 g12951.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 98 121 -
6 g12951.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 122 140 -
13 g12951.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 141 159 -
10 g12951.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 160 170 -
16 g12951.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 171 191 -
7 g12951.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 192 213 -
5 g12951.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 10 32 -
4 g12951.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 67 86 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005506 iron ion binding MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF
GO:0008610 lipid biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed