Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g1338.t1
  • List of isoforms

g1338.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00330

ko01100

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g1338.t1) is OG0000041. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012059327.1
Apis mellifera AMELL 1 GB41280-PA
Culicoides sonorensis CSONO 4 CSON001878-2, CSON009028-1, CSON002443-1, CSON002773-1
Polypedilum nubifer PNUBI 10 Pn.13364, Pn.05202, Pn.13365, Pn.05201, Pn.13322, Pn.05200, Pn.09959, Pn.00592, Pn.03097, Pn.05504
Polypedilum vanderplanki PVAND 4 g12632.t1, g10527.t1, g14108.t1, g1338.t1
Polypedilum pembai PPEMB 5 g5504.t1, g6995.t1, g11561.t1, g9875.t1, g11886.t1
Belgica antarctica BANTA 3 IU25_10799-mRNA-1, IU25_09593-mRNA-1, IU25_03207-mRNA-1
Clunio marinus CMARI 5 CRK94746.1, CRK96752.1, CRK97397.1, CRK98253.1, CRK96738.1
Aedes aegypti lvpagwg AAEGYL 3 AAEL007038-PB, AAEL005714-PE, AAEL017524-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 5 EDS45526.1, EDS45529.1, EDS26612.1, EDS45527.1, EDS45525.1
Culex quinquefasciatus CQUIN 5 CPIJ017127-PA, CPIJ000975-PA, CPIJ017131-PA, CPIJ017129-PA, CPIJ017128-PA
Anopheles atroparvus AATRO 2 AATE018643-PA, AATE005333-PA
Anopheles sinensis china ASINEC 1 ASIC006781-PA
Anopheles dirus ADIRU 2 ADIR008888-PA, ADIR000925-PA
Anopheles farauti AFARA 2 AFAF015993-PA, AFAF007026-PA
Anopheles epiroticus AEPIR 2 AEPI009001-PA, AEPI009137-PA
Anopheles christyi ACHRI 1 ACHR005429-PA
Anopheles merus AMERU 2 AMEM016900-PA, AMEM002002-PA
Anopheles melas AMELA 2 AMEC015235-PA, AMEC001503-PA
Anopheles arabiensis AARAB 2 AARA011714-PA, AARA011627-PA
Anopheles coluzzii ACOLU 1 ACOM038729-PA
Anopheles coluzzii ngousso ACOLUN 2 ACON000971-PA, ACON004611-PA
Anopheles gambiae AGAMB 2 AGAP004611-PA, AGAP000971-PA
Anopheles quadriannulatus AQUAD 2 AQUA011428-PA, AQUA007951-PA
Anopheles minimus AMINI 2 AMIN000029-PA, AMIN005110-PA
Anopheles culicifacies ACULI 2 ACUA003156-PA, ACUA026171-PA
Anopheles funestus AFUNE 2 AFUN004542-PA, AFUN006961-PA
Anopheles stephensi indian ASTEPI 2 ASTEI03578-PA, ASTEI06978-PA
Anopheles stephensi ASTEP 2 ASTE000258-PA, ASTE002848-PA
Anopheles albimanus AALBI 2 AALB006309-PA, AALB008332-PA
Anopheles darlingi ADARL 2 ADAC003251-PA, ADAC004511-PA
Drosophila willistoni DWILL 16 FBpp0243279, FBpp0253401, FBpp0242266, FBpp0242267, FBpp0243284, FBpp0377025, FBpp0243280, FBpp0374642, FBpp0380042, FBpp0380145, FBpp0378834, FBpp0240876, FBpp0379475, FBpp0377695, FBpp0242268, FBpp0241337
Drosophila pseudoobscura DPSEU 29 FBpp0334636, FBpp0282911, FBpp0336881, FBpp0301936, FBpp0288179, FBpp0283124, FBpp0288181, FBpp0333492, FBpp0275476, FBpp0283083, FBpp0275478, FBpp0283079, FBpp0329319, FBpp0282957, FBpp0339384, FBpp0331839, FBpp0283123, FBpp0282909, FBpp0282910, FBpp0336424, FBpp0335301, FBpp0300242, FBpp0335613, FBpp0282955, FBpp0282952, FBpp0283075, FBpp0336875, FBpp0282915, FBpp0288180
Drosophila persimilis DPERS 29 FBpp0188292, FBpp0178151, FBpp0177574, FBpp0177579, FBpp0177613, FBpp0177617, FBpp0177578, FBpp0178103, FBpp0177576, FBpp0177570, FBpp0186988, FBpp0186987, FBpp0178147, FBpp0177572, FBpp0178101, FBpp0189688, FBpp0177616, FBpp0186986, FBpp0177575, FBpp0184178, FBpp0177571, FBpp0186989, FBpp0178149, FBpp0188291, FBpp0178108, FBpp0177614, FBpp0188351, FBpp0177615, FBpp0178102
Drosophila ananassae DANAN 19 FBpp0126437, FBpp0126823, FBpp0342931, FBpp0126821, FBpp0117644, FBpp0126522, FBpp0126096, FBpp0348784, FBpp0346304, FBpp0126820, FBpp0342817, FBpp0344388, FBpp0126520, FBpp0345959, FBpp0342240, FBpp0126523, FBpp0126100, FBpp0352026, FBpp0126101
Drosophila melanogaster DMELA 21 FBpp0085050, FBpp0085047, FBpp0085033, FBpp0085012, FBpp0099996, FBpp0085029, FBpp0293245, FBpp0111465, FBpp0085015, FBpp0300825, FBpp0290184, FBpp0303836, FBpp0085051, FBpp0289328, FBpp0085048, FBpp0289601, FBpp0110158, FBpp0085019, FBpp0085032, FBpp0289326, FBpp0085046
Drosophila sechellia DSECH 22 FBpp0194362, FBpp0193616, FBpp0194665, FBpp0205187, FBpp0196457, FBpp0193617, FBpp0194359, FBpp0193629, FBpp0194365, FBpp0194226, FBpp0196458, FBpp0194375, FBpp0193625, FBpp0196454, FBpp0197665, FBpp0205188, FBpp0193626, FBpp0193623, FBpp0196455, FBpp0194361, FBpp0194374, FBpp0193628
Drosophila simulans DSIMU 21 FBpp0219925, FBpp0326118, FBpp0324453, FBpp0323461, FBpp0215437, FBpp0213159, FBpp0219923, FBpp0213157, FBpp0215382, FBpp0215304, FBpp0213160, FBpp0216925, FBpp0321312, FBpp0320478, FBpp0215315, FBpp0213156, FBpp0313891, FBpp0318728, FBpp0318862, FBpp0215393, FBpp0317354
Drosophila erecta DEREC 20 FBpp0130299, FBpp0130465, FBpp0130313, FBpp0369973, FBpp0130473, FBpp0130301, FBpp0142468, FBpp0130464, FBpp0132212, FBpp0132207, FBpp0372341, FBpp0130474, FBpp0130478, FBpp0371416, FBpp0130304, FBpp0365185, FBpp0132208, FBpp0130312, FBpp0130302, FBpp0130475
Drosophila yakuba DYAKU 21 FBpp0362032, FBpp0255891, FBpp0268378, FBpp0255895, FBpp0268388, FBpp0255894, FBpp0268393, FBpp0268392, FBpp0364252, FBpp0264972, FBpp0364145, FBpp0255903, FBpp0268380, FBpp0356650, FBpp0364193, FBpp0354949, FBpp0268389, FBpp0353551, FBpp0255897, FBpp0270867, FBpp0264968
Drosophila virilis DVIRI 13 FBpp0393020, FBpp0228351, FBpp0400060, FBpp0237410, FBpp0237174, FBpp0239048, FBpp0238920, FBpp0237176, FBpp0238921, FBpp0237411, FBpp0238650, FBpp0393282, FBpp0238919
Drosophila mojavensis DMOJA 14 FBpp0171974, FBpp0162811, FBpp0162810, FBpp0159855, FBpp0174078, FBpp0171973, FBpp0162814, FBpp0159854, FBpp0159863, FBpp0172260, FBpp0162813, FBpp0174079, FBpp0174077, FBpp0171332
Drosophila grimshawi DGRIM 16 FBpp0151334, FBpp0410521, FBpp0403449, FBpp0410336, FBpp0422034, FBpp0414581, FBpp0148011, FBpp0419621, FBpp0413166, FBpp0403366, FBpp0406077, FBpp0146884, FBpp0422163, FBpp0410654, FBpp0405567, FBpp0404632
Lucilia cuprina LCUPR 4 KNC20804, KNC20779, KNC20777, KNC20776
Musca domestica MDOME 9 MDOA001003-PA, MDOA010701-PB, MDOA016233-PA, MDOA007386-PA, MDOA012102-PA, MDOA009869-PA, MDOA015425-PB, MDOA003822-PB, MDOA009640-PA
Stomoxys calcitrans SCALC 11 SCAU009683-PA, SCAU003600-PA, SCAU013847-PA, SCAU011551-PA, SCAU014708-PA, SCAU012608-PA, SCAU011564-PA, SCAU009813-PA, SCAU008019-PA, SCAU012785-PA, SCAU003304-PA
Glossina brevipalpis GBREV 6 GBRI025668-PA, GBRI025664-PA, GBRI025663-PA, GBRI025660-PA, GBRI012130-PA, GBRI025669-PA
Glossina palpalis GPALP 6 GPPI041106-PA, GPPI041103-PA, GPPI041107-PA, GPPI040766-PA, GPPI041104-PA, GPPI041108-PA
Glossina austeni GAUST 4 GAUT048987-PA, GAUT048998-PA, GAUT048991-PA, GAUT048992-PA
Glossina pallidipes GPALL 5 GPAI029849-PA, GPAI029845-PA, GPAI029858-PA, GPAI029850-PA, GPAI029848-PA
Glossina morsitans GMORS 3 GMOY000555-PA, GMOY000553-PA, GMOY000554-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g1338.t1) is OG0000366. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN38814_c0_g1_i1.p4, TRINITY_DN2251_c0_g1_i14.p1, TRINITY_DN1545_c0_g1_i6.p1, TRINITY_DN19318_c0_g1_i2.p1, TRINITY_DN24202_c0_g1_i2.p1, TRINITY_DN81833_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG08760, PSG11649, PSG10715, PSG11878
Trissopelopia nemorum TNEMO TRINITY_DN2203_c0_g1_i1.p1, TRINITY_DN35330_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN2855_c0_g1_i3.p1
Telmatogeton pecinata TPECI TRINITY_DN540_c0_g1_i14.p1, TRINITY_DN0_c9598_g1_i1.p1, TRINITY_DN51922_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN10794_c0_g1_i1.p1, TRINITY_DN11549_c0_g1_i2.p1, TRINITY_DN2923_c0_g1_i1.p1, TRINITY_DN46954_c0_g1_i1.p1, TRINITY_DN87955_c0_g1_i1.p1, TRINITY_DN6409_c0_g1_i1.p1, TRINITY_DN23614_c0_g1_i1.p1, TRINITY_DN3057_c0_g1_i1.p1, TRINITY_DN54809_c0_g1_i1.p1, TRINITY_DN69530_c0_g1_i1.p1, TRINITY_DN22023_c0_g1_i1.p1
Clunio marinus CMARI CRK94746.1, CRK96752.1, CRK97397.1, CRK98253.1, CRK96738.1
Cardiocladius sp CARDI TRINITY_DN2868_c0_g1_i3.p1, TRINITY_DN13898_c0_g1_i1.p1, TRINITY_DN49380_c0_g1_i1.p1
Belgica antarctica BANTA IU25_10799-mRNA-1, IU25_09593-mRNA-1, IU25_03207-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN216520_c0_g1_i1.p1, TRINITY_DN265025_c0_g1_i1.p1, TRINITY_DN194859_c0_g1_i1.p1, TRINITY_DN7274_c0_g1_i2.p1, TRINITY_DN2752_c3_g1_i1.p2, TRINITY_DN2752_c0_g1_i2.p1
Chironomus riparius CRIPA g10297.t1, g11473.t1, g6762.t1
Chironomus columbiensis CCOLU TRINITY_DN15535_c0_g1_i4.p1, TRINITY_DN6464_c0_g2_i1.p1, TRINITY_DN3552_c0_g1_i24.p1, TRINITY_DN30101_c0_g1_i1.p1, TRINITY_DN17734_c0_g2_i1.p1
Chironomus tentans CTENT g3523.t1, g11169.t1, g3521.t1, g12074.t1
Chironomus dilutus CDILU TRINITY_DN195_c0_g3_i2.p1, TRINITY_DN7888_c0_g1_i1.p1, TRINITY_DN4746_c0_g1_i5.p1, TRINITY_DN195_c0_g4_i1.p1, TRINITY_DN195_c0_g1_i2.p1
Polypedilum nubifer PNUBI Pn.13364, Pn.05202, Pn.13365, Pn.05201, Pn.13322, Pn.05200, Pn.09959, Pn.00592, Pn.03097, Pn.05504
Polypedilum vanderplanki PVAND g12632.t1, g10527.t1, g14108.t1, g1338.t1
Polypedilum pembai PPEMB g5504.t1, g6995.t1, g9875.t1, g11886.t1
Culicoides sonorensis CSONO CSON001878-2, CSON002773-1
Aedes aegypti lvpagwg AAEGYL AAEL007038-PB, AAEL005714-PE, AAEL017524-PA
Anopheles gambiae AGAMB AGAP004611-PA, AGAP000971-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation