Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13462 g13462.t14 TTS g13462.t14 30323599 30323599
chr_1 g13462 g13462.t14 isoform g13462.t14 30324230 30324665
chr_1 g13462 g13462.t14 exon g13462.t14.exon1 30324230 30324665
chr_1 g13462 g13462.t14 cds g13462.t14.CDS1 30324231 30324665
chr_1 g13462 g13462.t14 TSS g13462.t14 30324729 30324729

Sequences

>g13462.t14 Gene=g13462 Length=436
ATGAATTTCGCCGGAAAAGTAGTTTTAATAACCGGAGCATCAAGTGGAATTGGGGCACAA
GCTGCTATAAAATTTGCACAACATGGTGCTTTATTAAGCATTACCGGCAGAAAATTAGAA
AATCTTGAAAAAGTTGCTAGTGAATGCAAAGGTGAAAAACCTTTGATTGTGAATGGCGAC
ATTACAAATGAGACAGACACAAAAAGAATTTTTGATGAAACAATTAAAAAGTATGGAAAA
CTTGATGTACTTGTGAATTGTGCAGGAATAATTGAAACTGGCACAATTGAAAATACTTCA
TTGGAACAATATGATCGAGTTATGAATATGAACATGCGCTCAATTTATCACTTGACAATG
CTTGCTGTACCATATTTAATCAAAAGTCAAGGAAATGTTGTAAATGTTTCAAGTGTTAAT
GGAGTTAGAAGTTTTC

>g13462.t14 Gene=g13462 Length=145
MNFAGKVVLITGASSGIGAQAAIKFAQHGALLSITGRKLENLEKVASECKGEKPLIVNGD
ITNETDTKRIFDETIKKYGKLDVLVNCAGIIETGTIENTSLEQYDRVMNMNMRSIYHLTM
LAVPYLIKSQGNVVNVSSVNGVRSF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g13462.t14 Gene3D G3DSA:3.40.50.720 - 1 145 6.0E-46
2 g13462.t14 PANTHER PTHR43975:SF2 ZGC:101858 1 145 1.1E-54
3 g13462.t14 PANTHER PTHR43975 ZGC:101858 1 145 1.1E-54
8 g13462.t14 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.7E-16
4 g13462.t14 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 5.0E-5
7 g13462.t14 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 4.7E-16
6 g13462.t14 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 4.7E-16
5 g13462.t14 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 5.0E-5
1 g13462.t14 Pfam PF00106 short chain dehydrogenase 6 143 1.1E-37
12 g13462.t14 Phobius SIGNAL_PEPTIDE Signal peptide region 1 21 -
13 g13462.t14 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 6 -
14 g13462.t14 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 7 17 -
15 g13462.t14 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 18 21 -
11 g13462.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 22 145 -
9 g13462.t14 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1 143 1.01E-43

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

## [1] "No matching GO terms"

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed