Gene loci information

Isoforms of this gene

  • There are 14 isoforms that are expressed from this gene.
  • The longest transcript is g13462.t8
  • List of isoforms

g13462.t1, g13462.t2, g13462.t3, g13462.t4, g13462.t5, g13462.t6, g13462.t7, g13462.t8, g13462.t9, g13462.t10, g13462.t11, g13462.t12, g13462.t13, g13462.t14

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00061
ko00333
ko00780
ko01100
ko01110
ko01212
ko01240

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g13462.t8) is OG0000179. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 7 XP_012060819.1, XP_012060818.1, XP_012060840.1, XP_012060821.1, XP_012062397.1, XP_012060841.1, XP_012054390.1
Apis mellifera AMELL 1 GB54606-PA
Culicoides sonorensis CSONO 6 CSON015600-1, CSON012877-1, CSON010729-1, CSON004755-1, CSON013789-1, CSON004864-1
Polypedilum nubifer PNUBI 2 Pn.08337, Pn.03632
Polypedilum vanderplanki PVAND 3 g13462.t8, g13463.t1, g7622.t1
Polypedilum pembai PPEMB 3 g4740.t1, g4727.t1, g4739.t1
Belgica antarctica BANTA 4 IU25_09447-mRNA-1, IU25_09446-mRNA-1, IU25_07213-mRNA-1, IU25_06581-mRNA-1
Clunio marinus CMARI 4 CRK86212.1, CRL04899.1, CRL04898.1, CRL00218.1
Aedes aegypti lvpagwg AAEGYL 7 AAEL010137-PA, AAEL025481-PA, AAEL017133-PA, AAEL008159-PA, AAEL027985-PA, AAEL008152-PA, AAEL007893-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 4 EDS42930.1, EDS42931.1, EDS38266.1, EDS38413.1
Culex quinquefasciatus CQUIN 4 CPIJ015686-PA, CPIJ012909-PA, CPIJ015685-PA, CPIJ013219-PA
Anopheles atroparvus AATRO 3 AATE008249-PA, AATE000763-PA, AATE004208-PA
Anopheles sinensis china ASINEC 4 ASIC010576-PA, ASIC018166-PA, ASIC018167-PA, ASIC010575-PA
Anopheles dirus ADIRU 3 ADIR010343-PA, ADIR002354-PA, ADIR010341-PA
Anopheles farauti AFARA 4 AFAF001682-PA, AFAF002750-PA, AFAF020488-PA, AFAF015829-PA
Anopheles epiroticus AEPIR 3 AEPI003469-PA, AEPI003467-PA, AEPI001974-PA
Anopheles christyi ACHRI 2 ACHR005438-PA, ACHR005437-PA
Anopheles merus AMERU 3 AMEM008594-PA, AMEM007725-PA, AMEM018344-PA
Anopheles melas AMELA 4 AMEC003435-PA, AMEC001113-PA, AMEC000231-PA, AMEC008174-PA
Anopheles arabiensis AARAB 3 AARA000670-PA, AARA004345-PA, AARA017151-PA
Anopheles coluzzii ACOLU 3 ACOM036855-PA, ACOM036866-PA, ACOM032101-PA
Anopheles coluzzii ngousso ACOLUN 3 ACON002520-PA, ACON011852-PA, ACON002521-PA
Anopheles gambiae AGAMB 3 AGAP011852-PA, AGAP002520-PA, AGAP002521-PA
Anopheles quadriannulatus AQUAD 3 AQUA009435-PA, AQUA009065-PA, AQUA009433-PA
Anopheles minimus AMINI 3 AMIN008559-PA, AMIN002531-PA, AMIN002530-PA
Anopheles culicifacies ACULI 3 ACUA012309-PA, ACUA025928-PA, ACUA002770-PA
Anopheles funestus AFUNE 5 AFUN019679-PA, AFUN021993-PA, AFUN001133-PA, AFUN019194-PA, AFUN020308-PA
Anopheles stephensi indian ASTEPI 3 ASTEI07965-PA, ASTEI05069-PA, ASTEI07966-PA
Anopheles stephensi ASTEP 3 ASTE000693-PA, ASTE000692-PA, ASTE005696-PA
Anopheles albimanus AALBI 3 AALB009164-PA, AALB009165-PA, AALB010287-PA
Anopheles darlingi ADARL 3 ADAC009420-PA, ADAC003387-PA, ADAC009417-PA
Drosophila willistoni DWILL 5 FBpp0243071, FBpp0242508, FBpp0239312, FBpp0243070, FBpp0374911
Drosophila pseudoobscura DPSEU 4 FBpp0281814, FBpp0284167, FBpp0273459, FBpp0284166
Drosophila persimilis DPERS 4 FBpp0188617, FBpp0188618, FBpp0178524, FBpp0187128
Drosophila ananassae DANAN 5 FBpp0119531, FBpp0125238, FBpp0121849, FBpp0121848, FBpp0119530
Drosophila melanogaster DMELA 5 FBpp0078356, FBpp0070179, FBpp0078357, FBpp0078386, FBpp0078385
Drosophila sechellia DSECH 5 FBpp0192303, FBpp0192084, FBpp0200483, FBpp0192302, FBpp0192083
Drosophila simulans DSIMU 4 FBpp0214847, FBpp0217997, FBpp0318848, FBpp0218205
Drosophila erecta DEREC 5 FBpp0129465, FBpp0129460, FBpp0131511, FBpp0131516, FBpp0131274
Drosophila yakuba DYAKU 5 FBpp0261564, FBpp0255156, FBpp0269162, FBpp0269163, FBpp0255157
Drosophila virilis DVIRI 5 FBpp0225461, FBpp0229771, FBpp0224541, FBpp0224542, FBpp0225462
Drosophila mojavensis DMOJA 4 FBpp0164214, FBpp0159458, FBpp0171738, FBpp0159457
Drosophila grimshawi DGRIM 3 FBpp0156890, FBpp0156879, FBpp0151423
Lucilia cuprina LCUPR 3 KNC34518, KNC27002, KNC34517
Musca domestica MDOME 4 MDOA011841-PA, MDOA011304-PA, MDOA001284-PA, MDOA008159-PA
Stomoxys calcitrans SCALC 5 SCAU009178-PA, SCAU007788-PA, SCAU012635-PA, SCAU001947-PA, SCAU012270-PA
Glossina brevipalpis GBREV 3 GBRI029969-PA, GBRI029964-PA, GBRI029962-PA
Glossina palpalis GPALP 2 GPPI026408-PA, GPPI026423-PA
Glossina austeni GAUST 3 GAUT012740-PA, GAUT012746-PA, GAUT012736-PA
Glossina pallidipes GPALL 3 GPAI011396-PA, GPAI011393-PA, GPAI011397-PA
Glossina morsitans GMORS 3 GMOY004809-PA, GMOY004808-PA, GMOY004810-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g13462.t8) is OG0000586. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN17214_c0_g1_i11.p1, TRINITY_DN1007_c0_g2_i2.p1, TRINITY_DN2980_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG11994, PSG11982
Trissopelopia nemorum TNEMO TRINITY_DN826_c0_g1_i4.p1, TRINITY_DN397_c0_g4_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN343_c0_g1_i1.p1, TRINITY_DN2084_c0_g1_i2.p1
Telmatogeton pecinata TPECI TRINITY_DN28378_c1_g1_i1.p1, TRINITY_DN12790_c0_g1_i1.p1, TRINITY_DN73_c0_g1_i3.p1, TRINITY_DN19434_c0_g1_i1.p1, TRINITY_DN519_c0_g2_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN45509_c0_g1_i1.p1, TRINITY_DN3968_c0_g1_i1.p1, TRINITY_DN30333_c0_g1_i1.p1, TRINITY_DN2924_c0_g1_i1.p1, TRINITY_DN93145_c0_g1_i1.p1, TRINITY_DN48064_c0_g1_i1.p1, TRINITY_DN12545_c0_g1_i1.p1
Clunio marinus CMARI CRK86212.1, CRL04899.1, CRL04898.1, CRL00218.1
Cardiocladius sp CARDI TRINITY_DN5087_c0_g1_i6.p1, TRINITY_DN10262_c0_g1_i4.p1, TRINITY_DN4764_c0_g1_i1.p1, TRINITY_DN45173_c0_g1_i1.p1
Belgica antarctica BANTA IU25_09446-mRNA-1, IU25_07213-mRNA-1, IU25_06581-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN5002_c0_g1_i7.p1, TRINITY_DN3651_c0_g1_i15.p1, TRINITY_DN3985_c1_g1_i10.p1, TRINITY_DN690_c1_g1_i5.p1, TRINITY_DN325_c0_g1_i3.p1, TRINITY_DN36238_c0_g1_i1.p1, TRINITY_DN325_c0_g2_i1.p1, TRINITY_DN50509_c0_g1_i2.p1, TRINITY_DN164019_c0_g1_i1.p1
Chironomus riparius CRIPA g3749.t1, g3748.t1
Chironomus columbiensis CCOLU TRINITY_DN2128_c0_g1_i3.p1, TRINITY_DN1788_c0_g1_i2.p1
Chironomus tentans CTENT g13094.t1, g12333.t1, g12332.t1
Chironomus dilutus CDILU TRINITY_DN49215_c0_g1_i1.p1, TRINITY_DN48106_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.08337, Pn.03632
Polypedilum vanderplanki PVAND g13462.t8, g13463.t1, g7622.t1
Polypedilum pembai PPEMB g4740.t1, g4727.t1, g4739.t1
Culicoides sonorensis CSONO CSON015600-1, CSON012877-1, CSON013789-1, CSON004864-1
Aedes aegypti lvpagwg AAEGYL AAEL017133-PA, AAEL008159-PA, AAEL027985-PA, AAEL008152-PA, AAEL007893-PA
Anopheles gambiae AGAMB AGAP011852-PA, AGAP002520-PA, AGAP002521-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation