Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g1961.t1
  • List of isoforms

g1961.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g1961.t1) is OG0087856. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 0 none
Apis mellifera AMELL 0 none
Culicoides sonorensis CSONO 0 none
Polypedilum nubifer PNUBI 0 none
Polypedilum vanderplanki PVAND 1 g1961.t1
Polypedilum pembai PPEMB 0 none
Belgica antarctica BANTA 0 none
Clunio marinus CMARI 0 none
Aedes aegypti lvpagwg AAEGYL 0 none
Culex quinquefasciatus quinquefasciatus CQUINQ 0 none
Culex quinquefasciatus CQUIN 0 none
Anopheles atroparvus AATRO 0 none
Anopheles sinensis china ASINEC 0 none
Anopheles dirus ADIRU 0 none
Anopheles farauti AFARA 0 none
Anopheles epiroticus AEPIR 0 none
Anopheles christyi ACHRI 0 none
Anopheles merus AMERU 0 none
Anopheles melas AMELA 0 none
Anopheles arabiensis AARAB 0 none
Anopheles coluzzii ACOLU 0 none
Anopheles coluzzii ngousso ACOLUN 0 none
Anopheles gambiae AGAMB 0 none
Anopheles quadriannulatus AQUAD 0 none
Anopheles minimus AMINI 0 none
Anopheles culicifacies ACULI 0 none
Anopheles funestus AFUNE 0 none
Anopheles stephensi indian ASTEPI 0 none
Anopheles stephensi ASTEP 0 none
Anopheles albimanus AALBI 0 none
Anopheles darlingi ADARL 0 none
Drosophila willistoni DWILL 0 none
Drosophila pseudoobscura DPSEU 0 none
Drosophila persimilis DPERS 0 none
Drosophila ananassae DANAN 0 none
Drosophila melanogaster DMELA 0 none
Drosophila sechellia DSECH 0 none
Drosophila simulans DSIMU 0 none
Drosophila erecta DEREC 0 none
Drosophila yakuba DYAKU 0 none
Drosophila virilis DVIRI 0 none
Drosophila mojavensis DMOJA 0 none
Drosophila grimshawi DGRIM 0 none
Lucilia cuprina LCUPR 0 none
Musca domestica MDOME 0 none
Stomoxys calcitrans SCALC 0 none
Glossina brevipalpis GBREV 0 none
Glossina palpalis GPALP 0 none
Glossina austeni GAUST 0 none
Glossina pallidipes GPALL 0 none
Glossina morsitans GMORS 0 none

Gene tree

This gene has not been clustered with other genes, so there is no gene tree.

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g1961.t1) is OG0000060. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN98638_c0_g1_i1.p3, TRINITY_DN31115_c0_g1_i5.p1, TRINITY_DN3042_c0_g2_i1.p1, TRINITY_DN10250_c0_g1_i4.p1, TRINITY_DN30310_c0_g1_i1.p1, TRINITY_DN4638_c0_g1_i13.p1, TRINITY_DN14843_c0_g1_i1.p2, TRINITY_DN54732_c1_g1_i1.p1
Parochlus steinenii PSTEI PSG12361, PSG07983, PSG03687, PSG08688, PSG03672
Trissopelopia nemorum TNEMO TRINITY_DN1712_c1_g2_i1.p1, TRINITY_DN1981_c0_g1_i10.p1, TRINITY_DN1712_c0_g1_i1.p1, TRINITY_DN41393_c0_g1_i1.p1, TRINITY_DN46879_c0_g1_i1.p1, TRINITY_DN24333_c0_g1_i1.p1, TRINITY_DN1712_c1_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN4229_c1_g1_i1.p1, TRINITY_DN10084_c0_g1_i1.p2, TRINITY_DN2606_c0_g2_i4.p1, TRINITY_DN5152_c0_g1_i3.p1, TRINITY_DN29978_c0_g1_i1.p1, TRINITY_DN2575_c0_g2_i5.p1, TRINITY_DN12498_c0_g1_i1.p1, TRINITY_DN29013_c0_g1_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN2808_c0_g2_i3.p1, TRINITY_DN15546_c0_g1_i1.p4, TRINITY_DN11502_c0_g1_i2.p1, TRINITY_DN7073_c0_g1_i3.p1, TRINITY_DN4354_c0_g1_i3.p1, TRINITY_DN10517_c0_g1_i3.p1, TRINITY_DN0_c5729_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN29122_c0_g1_i1.p1, TRINITY_DN26806_c0_g1_i1.p1, TRINITY_DN9108_c0_g1_i6.p1, TRINITY_DN54194_c0_g1_i1.p1, TRINITY_DN10843_c0_g1_i1.p1, TRINITY_DN30245_c0_g1_i1.p1, TRINITY_DN45010_c0_g1_i1.p1, TRINITY_DN61161_c0_g1_i1.p1, TRINITY_DN16330_c0_g1_i1.p1, TRINITY_DN26683_c0_g1_i1.p1, TRINITY_DN56465_c0_g1_i1.p1, TRINITY_DN20270_c0_g1_i1.p1, TRINITY_DN4160_c0_g1_i2.p1, TRINITY_DN11074_c0_g1_i1.p1, TRINITY_DN30159_c0_g1_i1.p1
Clunio marinus CMARI CRL08606.1, CRL08604.1, CRK88329.1, CRL06704.1, CRK97375.1
Cardiocladius sp CARDI TRINITY_DN3139_c0_g1_i1.p1, TRINITY_DN2223_c0_g1_i5.p1, TRINITY_DN27774_c0_g1_i1.p1, TRINITY_DN11093_c0_g1_i7.p1, TRINITY_DN982_c0_g1_i8.p1, TRINITY_DN8907_c0_g1_i2.p1
Belgica antarctica BANTA IU25_10064-mRNA-1, IU25_02493-mRNA-1, IU25_02491-mRNA-1, IU25_02492-mRNA-1, IU25_02490-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN8414_c0_g4_i1.p1, TRINITY_DN26464_c0_g1_i3.p1, TRINITY_DN95540_c0_g2_i3.p1, TRINITY_DN271295_c0_g1_i1.p2, TRINITY_DN34141_c0_g1_i1.p1, TRINITY_DN23817_c0_g1_i1.p2, TRINITY_DN19455_c0_g1_i4.p1, TRINITY_DN239208_c0_g1_i1.p1, TRINITY_DN20676_c0_g1_i1.p1, TRINITY_DN8414_c0_g2_i1.p1, TRINITY_DN6188_c0_g1_i11.p1, TRINITY_DN8414_c0_g1_i2.p1, TRINITY_DN52794_c0_g1_i1.p1, TRINITY_DN187816_c0_g1_i1.p1, TRINITY_DN23817_c0_g2_i1.p1, TRINITY_DN199033_c0_g1_i1.p1, TRINITY_DN255399_c0_g1_i1.p1, TRINITY_DN47527_c0_g1_i1.p1, TRINITY_DN19174_c0_g1_i1.p1, TRINITY_DN8680_c0_g1_i4.p1, TRINITY_DN192007_c0_g1_i1.p1, TRINITY_DN62298_c0_g1_i1.p2, TRINITY_DN173436_c0_g1_i1.p1, TRINITY_DN8414_c0_g3_i1.p1, TRINITY_DN190692_c0_g1_i1.p1, TRINITY_DN49156_c0_g2_i1.p1
Chironomus riparius CRIPA g17321.t1, g5847.t1, g5845.t1, g5843.t1, g8807.t1, g5848.t1, g143.t1, g5846.t1, g5844.t1, g8895.t1, g8806.t1
Chironomus columbiensis CCOLU TRINITY_DN7756_c0_g1_i4.p1, TRINITY_DN6863_c0_g2_i2.p1, TRINITY_DN18251_c0_g1_i1.p1, TRINITY_DN4757_c0_g1_i1.p1, TRINITY_DN6863_c1_g1_i2.p1, TRINITY_DN6689_c0_g1_i3.p1, TRINITY_DN6863_c0_g1_i2.p1, TRINITY_DN198_c0_g1_i4.p1, TRINITY_DN198_c0_g2_i1.p1, TRINITY_DN7826_c0_g1_i1.p1, TRINITY_DN11435_c0_g1_i1.p1, TRINITY_DN12248_c0_g1_i1.p1, TRINITY_DN6689_c1_g1_i2.p1, TRINITY_DN198_c1_g1_i1.p1, TRINITY_DN4463_c0_g1_i1.p1, TRINITY_DN13309_c0_g1_i1.p1
Chironomus tentans CTENT g7569.t1, g7645.t1, g5471.t1, g17886.t1, g6126.t1, g7644.t1, g10215.t1, g14664.t1, g3466.t1, g14665.t1, g5470.t1, g5469.t1, g7570.t1, g8177.t1, g17140.t1
Chironomus dilutus CDILU TRINITY_DN8490_c0_g1_i3.p1, TRINITY_DN750_c1_g1_i1.p1, TRINITY_DN3712_c0_g1_i3.p1, TRINITY_DN8173_c0_g3_i1.p1, TRINITY_DN106_c0_g1_i2.p1, TRINITY_DN577_c7_g1_i1.p1, TRINITY_DN8173_c1_g1_i2.p1, TRINITY_DN8173_c0_g1_i2.p1, TRINITY_DN106_c0_g2_i3.p1, TRINITY_DN20747_c0_g1_i1.p1, TRINITY_DN8173_c0_g2_i1.p1, TRINITY_DN3712_c0_g2_i4.p1
Polypedilum nubifer PNUBI Pn.08765, Pn.08760, Pn.02808, Pn.13119, Pn.08766, Pn.08764, Pn.08767, Pn.06818, Pn.11583, Pn.06817, Pn.08763, Pn.02809, Pn.00744, Pn.08762, Pn.08768
Polypedilum vanderplanki PVAND g1960.t1, g7125.t1, g6778.t1, g6776.t1, g6775.t2, g1959.t1, g6799.t1, g1961.t1, g881.t1, g6798.t1, g6797.t1, g6774.t1, g6779.t1, g6777.t1
Polypedilum pembai PPEMB g13766.t1
Culicoides sonorensis CSONO CSON010344-1, CSON005967-1, CSON012748-1, CSON011723-1, CSON000210-1
Aedes aegypti lvpagwg AAEGYL AAEL013491-PA, AAEL013483-PA, AAEL002493-PA
Anopheles gambiae AGAMB AGAP007662-PA, AGAP005980-PA, AGAP007572-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation