General information for g2453.t109
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alaserpin.
Parent gene
- The parent gene g2453 is located on chr_3: 18040351..18047135 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2453 | g2453.t109 | TTS | g2453.t109 | 18036404 | 18036404 |
| chr_3 | g2453 | g2453.t109 | isoform | g2453.t109 | 18036409 | 18040145 |
| chr_3 | g2453 | g2453.t109 | exon | g2453.t109.exon1 | 18036409 | 18036585 |
| chr_3 | g2453 | g2453.t109 | cds | g2453.t109.CDS1 | 18036455 | 18036585 |
| chr_3 | g2453 | g2453.t109 | exon | g2453.t109.exon2 | 18038878 | 18039007 |
| chr_3 | g2453 | g2453.t109 | cds | g2453.t109.CDS2 | 18038878 | 18039007 |
| chr_3 | g2453 | g2453.t109 | exon | g2453.t109.exon3 | 18039101 | 18039684 |
| chr_3 | g2453 | g2453.t109 | cds | g2453.t109.CDS3 | 18039101 | 18039684 |
| chr_3 | g2453 | g2453.t109 | exon | g2453.t109.exon4 | 18039768 | 18039975 |
| chr_3 | g2453 | g2453.t109 | cds | g2453.t109.CDS4 | 18039768 | 18039975 |
| chr_3 | g2453 | g2453.t109 | exon | g2453.t109.exon5 | 18040042 | 18040145 |
| chr_3 | g2453 | g2453.t109 | cds | g2453.t109.CDS5 | 18040042 | 18040113 |
| chr_3 | g2453 | g2453.t109 | TSS | g2453.t109 | 18040147 | 18040147 |
Sequences
>g2453.t109 Gene=g2453 Length=1203
TTTGTGCTCTGACTATCGTGCTAAACGCATCAATGGCGTCACCCTCTGAAATCGAACAAA
AGTTTTCAAAATCAGCCAGCAACTTTGCTGCTAAATTGTACCAAAACTCAATTCAAGGAA
AAACTGGCAATGTAATTATTTCACCTGTCTCAGTTCAAACAGCCGTCACTTTGGCTATGT
TTGGTGCTGCTGGTGAGACCAAGCAAGAAATGTTAAAAGGTCTCGAATATCAGGGTTTCA
CTGATCAAATAATTGCTGATAACTATCAACGATTTGGCGAGAGCGTCGCAAAGACTAATG
GATTGAAAATCGCTAATAAGATTTATGTGATGAAAGGCTATTCAGTCAAGCCAACATTCC
AGCAAGTCGCAACAAAGAGTTTCAATTCAGAAGCTGAAGATGTAAATTTCGCACAAAGTA
AAGACTCAGCTGGCAAAATCAATACATGGGTTGAAAATCAAACAAATAATAAAATTAAAA
ATCTTATCTCACCTGATTCATTGGATGCTGACACACGTATGGTTCTTGTAAATGCCATTT
ACTTCAAAGGATTCTGGACCTATCAATTTGATCCAAAAGCAACATTCAAAGCACCATTCT
TTCTCAATGATAATGATAAAGTTGATGTTGATTTCATGAAAATTAAGAAACATTTCAAAT
ATGGACGATTTGATGATCTTGATGCAACTGCATTGGAATTGCCTTACAAAGATTCTGATA
TTACAATGTTGATAATTTTACCAAATAAACGCACTGGATTGGCTGAATTGGAGAGCAAAT
TGGACACAATTGACTTCAATGAGCTCACAACAAAGATGTATTCGGAAGAAGTTAATGTTG
AATTGCCAAAGTTTAAAATTGAATTTGACATTGAATTGACCGAGCCATTAAAGAAGAAAA
TGTTCTCAGATGCTGCTCAATTTGATGAATTGCTTACATCGACTGAACCTCTCAAGGTTT
CACAAGTTGTTCATAAAGCCTTCATTGAAGTCAATGAAGAAGGTGCTGAAGCAGCTGCTG
CTACAGCAATGATTATGATGTCAAGATGTGCAATGATTTCTCGTTCTCAACAATTTATTG
CGAACCGTCCATTTATTTTTGCATTGAAATTTGTTGCAGATGCTTTGTTTGTTGGAAGAA
TCGAAAATTTTAATTGAAATAAAGTATTACATGCTTGAATTCAATAAAAATTGTAATGAA
AAT
>g2453.t109 Gene=g2453 Length=374
MASPSEIEQKFSKSASNFAAKLYQNSIQGKTGNVIISPVSVQTAVTLAMFGAAGETKQEM
LKGLEYQGFTDQIIADNYQRFGESVAKTNGLKIANKIYVMKGYSVKPTFQQVATKSFNSE
AEDVNFAQSKDSAGKINTWVENQTNNKIKNLISPDSLDADTRMVLVNAIYFKGFWTYQFD
PKATFKAPFFLNDNDKVDVDFMKIKKHFKYGRFDDLDATALELPYKDSDITMLIILPNKR
TGLAELESKLDTIDFNELTTKMYSEEVNVELPKFKIEFDIELTEPLKKKMFSDAAQFDEL
LTSTEPLKVSQVVHKAFIEVNEEGAEAAAATAMIMMSRCAMISRSQQFIANRPFIFALKF
VADALFVGRIENFN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g2453.t109 | CDD | cd19601 | serpin42Da-like | 14 | 369 | 5.06545E-149 |
| 8 | g2453.t109 | Gene3D | G3DSA:3.30.497.10 | Antithrombin | 30 | 317 | 4.9E-114 |
| 7 | g2453.t109 | Gene3D | G3DSA:2.30.39.10 | - | 171 | 368 | 4.9E-114 |
| 2 | g2453.t109 | PANTHER | PTHR11461 | SERINE PROTEASE INHIBITOR, SERPIN | 11 | 370 | 4.1E-85 |
| 3 | g2453.t109 | PANTHER | PTHR11461:SF180 | LEUKOCYTE ELASTASE INHIBITOR | 11 | 370 | 4.1E-85 |
| 1 | g2453.t109 | Pfam | PF00079 | Serpin (serine protease inhibitor) | 14 | 372 | 7.1E-105 |
| 6 | g2453.t109 | ProSitePatterns | PS00284 | Serpins signature. | 348 | 358 | - |
| 5 | g2453.t109 | SMART | SM00093 | serpin2 | 20 | 373 | 2.3E-113 |
| 4 | g2453.t109 | SUPERFAMILY | SSF56574 | Serpins | 8 | 372 | 4.84E-113 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005615 | extracellular space | CC |
| GO:0004867 | serine-type endopeptidase inhibitor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K13963 (serpin B)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed