Gene loci information

Isoforms of this gene

  • There are 182 isoforms that are expressed from this gene.
  • The longest transcript is g2453.t3
  • List of isoforms

g2453.t1, g2453.t2, g2453.t3, g2453.t4, g2453.t5, g2453.t6, g2453.t7, g2453.t8, g2453.t9, g2453.t10, g2453.t11, g2453.t12, g2453.t13, g2453.t14, g2453.t15, g2453.t16, g2453.t17, g2453.t18, g2453.t19, g2453.t20, g2453.t21, g2453.t22, g2453.t23, g2453.t24, g2453.t25, g2453.t26, g2453.t28, g2453.t29, g2453.t30, g2453.t31, g2453.t32, g2453.t33, g2453.t34, g2453.t35, g2453.t36, g2453.t37, g2453.t38, g2453.t39, g2453.t40, g2453.t41, g2453.t42, g2453.t43, g2453.t44, g2453.t45, g2453.t46, g2453.t47, g2453.t48, g2453.t49, g2453.t50, g2453.t51, g2453.t52, g2453.t53, g2453.t54, g2453.t55, g2453.t56, g2453.t57, g2453.t58, g2453.t59, g2453.t60, g2453.t61, g2453.t62, g2453.t63, g2453.t64, g2453.t65, g2453.t66, g2453.t67, g2453.t68, g2453.t69, g2453.t70, g2453.t71, g2453.t73, g2453.t74, g2453.t75, g2453.t76, g2453.t77, g2453.t78, g2453.t79, g2453.t80, g2453.t81, g2453.t82, g2453.t83, g2453.t84, g2453.t85, g2453.t86, g2453.t87, g2453.t88, g2453.t89, g2453.t90, g2453.t91, g2453.t92, g2453.t93, g2453.t94, g2453.t95, g2453.t96, g2453.t97, g2453.t98, g2453.t99, g2453.t100, g2453.t101, g2453.t102, g2453.t103, g2453.t104, g2453.t105, g2453.t106, g2453.t107, g2453.t108, g2453.t109, g2453.t110, g2453.t111, g2453.t112, g2453.t113, g2453.t114, g2453.t115, g2453.t117, g2453.t118, g2453.t119, g2453.t120, g2453.t121, g2453.t122, g2453.t123, g2453.t124, g2453.t125, g2453.t126, g2453.t127, g2453.t128, g2453.t129, g2453.t130, g2453.t131, g2453.t132, g2453.t133, g2453.t134, g2453.t135, g2453.t136, g2453.t137, g2453.t138, g2453.t139, g2453.t140, g2453.t141, g2453.t142, g2453.t143, g2453.t144, g2453.t145, g2453.t146, g2453.t147, g2453.t148, g2453.t149, g2453.t150, g2453.t151, g2453.t152, g2453.t153, g2453.t154, g2453.t155, g2453.t156, g2453.t157, g2453.t158, g2453.t159, g2453.t160, g2453.t161, g2453.t162, g2453.t163, g2453.t164, g2453.t165, g2453.t166, g2453.t167, g2453.t168, g2453.t169, g2453.t170, g2453.t171, g2453.t172, g2453.t173, g2453.t174, g2453.t175, g2453.t176, g2453.t177, g2453.t178, g2453.t179, g2453.t180, g2453.t181, g2453.t182, g2453.t183, g2453.t185, g2453.t186

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko05146

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g2453.t3) is OG0000169. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012058216.1
Apis mellifera AMELL 2 GB46970-PA, GB48820-PA
Culicoides sonorensis CSONO 4 CSON006085-1, CSON004516-1, CSON010106-1, CSON009361-1
Polypedilum nubifer PNUBI 1 Pn.12849
Polypedilum vanderplanki PVAND 2 g14652.t1, g2453.t3
Polypedilum pembai PPEMB 1 g13595.t1
Belgica antarctica BANTA 1 IU25_11795-mRNA-1
Clunio marinus CMARI 1 CRK96979.1
Aedes aegypti lvpagwg AAEGYL 1 AAEL007765-PE
Culex quinquefasciatus quinquefasciatus CQUINQ 2 EDS41130.1, EDS41129.1
Culex quinquefasciatus CQUIN 2 CPIJ014719-PA, CPIJ014718-PA
Anopheles atroparvus AATRO 2 AATE012698-PB, AATE007843-PA
Anopheles sinensis china ASINEC 1 ASIC008504-PA
Anopheles dirus ADIRU 1 ADIR015670-PD
Anopheles farauti AFARA 1 AFAF012345-PC
Anopheles epiroticus AEPIR 1 AEPI015230-PA
Anopheles christyi ACHRI 0 none
Anopheles merus AMERU 1 AMEM014548-PB
Anopheles melas AMELA 1 AMEC017829-PD
Anopheles arabiensis AARAB 1 AARA002929-PB
Anopheles coluzzii ACOLU 1 ACOM037730-PC
Anopheles coluzzii ngousso ACOLUN 1 ACON005246-PD
Anopheles gambiae AGAMB 1 AGAP005246-PA
Anopheles quadriannulatus AQUAD 1 AQUA006128-PB
Anopheles minimus AMINI 1 AMIN011592-PD
Anopheles culicifacies ACULI 1 ACUA014483-PA
Anopheles funestus AFUNE 1 AFUN006047-PB
Anopheles stephensi indian ASTEPI 1 ASTEI05989-PA
Anopheles stephensi ASTEP 2 ASTE008411-PA, ASTE007248-PC
Anopheles albimanus AALBI 5 AALB004411-PA, AALB004329-PA, AALB004183-PA, AALB004317-PA, AALB004201-PA
Anopheles darlingi ADARL 6 ADAC003360-PA, ADAC003281-PA, ADAC002817-PA, ADAC002818-PA, ADAC001469-PA, ADAC006056-PA
Drosophila willistoni DWILL 8 FBpp0249900, FBpp0249901, FBpp0249902, FBpp0250934, FBpp0251388, FBpp0376910, FBpp0250028, FBpp0250029
Drosophila pseudoobscura DPSEU 7 FBpp0286119, FBpp0277334, FBpp0333173, FBpp0277302, FBpp0276691, FBpp0277303, FBpp0277131
Drosophila persimilis DPERS 7 FBpp0175072, FBpp0174641, FBpp0175233, FBpp0186007, FBpp0175263, FBpp0175232, FBpp0175071
Drosophila ananassae DANAN 5 FBpp0116339, FBpp0114954, FBpp0114883, FBpp0116337, FBpp0115890
Drosophila melanogaster DMELA 6 FBpp0085912, FBpp0085495, FBpp0085497, FBpp0289586, FBpp0088112, FBpp0085523
Drosophila sechellia DSECH 9 FBpp0203321, FBpp0202410, FBpp0202318, FBpp0193416, FBpp0204073, FBpp0202382, FBpp0202380, FBpp0202381, FBpp0192551
Drosophila simulans DSIMU 6 FBpp0208834, FBpp0208861, FBpp0209740, FBpp0208832, FBpp0316797, FBpp0208694
Drosophila erecta DEREC 6 FBpp0141775, FBpp0366671, FBpp0141806, FBpp0140389, FBpp0141776, FBpp0372917
Drosophila yakuba DYAKU 6 FBpp0264120, FBpp0256932, FBpp0264092, FBpp0269398, FBpp0264090, FBpp0264091
Drosophila virilis DVIRI 9 FBpp0391967, FBpp0229568, FBpp0391998, FBpp0393343, FBpp0231962, FBpp0396809, FBpp0397807, FBpp0237768, FBpp0236901
Drosophila mojavensis DMOJA 8 FBpp0384339, FBpp0159351, FBpp0159350, FBpp0385890, FBpp0168637, FBpp0382426, FBpp0389652, FBpp0159349
Drosophila grimshawi DGRIM 6 FBpp0411701, FBpp0155919, FBpp0414276, FBpp0408034, FBpp0155425, FBpp0154157
Lucilia cuprina LCUPR 5 KNC29339, KNC26552, KNC32860, KNC32854, KNC32851
Musca domestica MDOME 15 MDOA008906-PA, MDOA006068-PB, MDOA004819-PB, MDOA005200-PA, MDOA014007-PA, MDOA005647-PB, MDOA007789-PB, MDOA006228-PA, MDOA003786-PA, MDOA005829-PA, MDOA015810-PA, MDOA013545-PA, MDOA004090-PC, MDOA008489-PA, MDOA002982-PB
Stomoxys calcitrans SCALC 26 SCAU011023-PA, SCAU014443-PA, SCAU008849-PE, SCAU003987-PA, SCAU004063-PA, SCAU008208-PA, SCAU016394-PA, SCAU014864-PB, SCAU009939-PA, SCAU015108-PA, SCAU014205-PA, SCAU004853-PA, SCAU011915-PA, SCAU013016-PA, SCAU015896-PA, SCAU012695-PC, SCAU002599-PA, SCAU005405-PA, SCAU007332-PA, SCAU001912-PA, SCAU003972-PA, SCAU006963-PA, SCAU005241-PA, SCAU011621-PA, SCAU009306-PA, SCAU010283-PA
Glossina brevipalpis GBREV 3 GBRI011241-PA, GBRI004383-PA, GBRI011243-PA
Glossina palpalis GPALP 3 GPPI033766-PA, GPPI017642-PA, GPPI017647-PB
Glossina austeni GAUST 3 GAUT046196-PA, GAUT046192-PA, GAUT014044-PA
Glossina pallidipes GPALL 4 GPAI011576-PA, GPAI043551-PA, GPAI039809-PA, GPAI039813-PA
Glossina morsitans GMORS 3 GMOY012007-PA, GMOY002444-PA, GMOY002443-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g2453.t3) is OG0000208. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN5255_c0_g1_i1.p2, TRINITY_DN3442_c0_g1_i13.p1
Parochlus steinenii PSTEI PSG12179, PSG04482, PSG08187, PSG01579, PSG08485
Trissopelopia nemorum TNEMO TRINITY_DN456_c0_g1_i7.p1, TRINITY_DN0_c97_g2_i1.p1, TRINITY_DN361_c0_g1_i4.p1, TRINITY_DN1767_c0_g1_i5.p1, TRINITY_DN502_c0_g1_i1.p1, TRINITY_DN8617_c0_g1_i4.p1, TRINITY_DN1400_c0_g1_i1.p1, TRINITY_DN1463_c4_g1_i1.p3, TRINITY_DN4871_c0_g1_i1.p1, TRINITY_DN407_c1_g3_i1.p1, TRINITY_DN7649_c0_g2_i2.p1, TRINITY_DN122_c0_g1_i28.p1, TRINITY_DN2591_c0_g1_i6.p1, TRINITY_DN313_c2_g1_i1.p1, TRINITY_DN3921_c0_g1_i4.p1, TRINITY_DN729_c0_g1_i15.p1, TRINITY_DN663_c0_g1_i3.p1, TRINITY_DN22579_c0_g1_i2.p1, TRINITY_DN26414_c0_g1_i1.p3, TRINITY_DN122_c1_g1_i1.p1, TRINITY_DN407_c0_g1_i10.p1, TRINITY_DN313_c0_g1_i8.p1, TRINITY_DN7649_c0_g1_i1.p1, TRINITY_DN502_c0_g2_i2.p1, TRINITY_DN3273_c0_g1_i3.p1, TRINITY_DN2716_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN1318_c0_g1_i20.p1
Telmatogeton pecinata TPECI TRINITY_DN0_c4773_g1_i1.p2, TRINITY_DN762_c0_g1_i53.p1, TRINITY_DN0_c9655_g1_i1.p2, TRINITY_DN0_c1077_g1_i1.p1, TRINITY_DN17021_c1_g1_i2.p1, TRINITY_DN50370_c0_g1_i1.p1, TRINITY_DN48119_c0_g1_i1.p1, TRINITY_DN0_c506_g4_i1.p2, TRINITY_DN67894_c0_g1_i1.p1, TRINITY_DN44484_c0_g1_i1.p1, TRINITY_DN37130_c0_g1_i1.p1, TRINITY_DN1418_c0_g1_i2.p1
Cricotopus draysoni CDRAY TRINITY_DN2730_c0_g1_i1.p1, TRINITY_DN34183_c0_g1_i2.p1, TRINITY_DN79940_c0_g1_i1.p2
Clunio marinus CMARI CRK96979.1
Cardiocladius sp CARDI TRINITY_DN18732_c0_g1_i1.p3, TRINITY_DN67011_c0_g1_i1.p1, TRINITY_DN31886_c0_g1_i1.p1
Belgica antarctica BANTA IU25_11795-mRNA-1, IU25_12623-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN198048_c0_g1_i1.p1, TRINITY_DN54845_c3_g1_i1.p1, TRINITY_DN1733_c0_g1_i7.p1, TRINITY_DN37490_c0_g1_i1.p1, TRINITY_DN36128_c0_g2_i1.p1, TRINITY_DN61926_c0_g1_i1.p1, TRINITY_DN219246_c0_g1_i1.p1, TRINITY_DN218_c5_g1_i1.p1, TRINITY_DN36128_c0_g1_i1.p1, TRINITY_DN66592_c0_g1_i3.p1
Chironomus riparius CRIPA g14541.t1, g4637.t1, g10364.t1
Chironomus columbiensis CCOLU TRINITY_DN79797_c0_g1_i1.p1, TRINITY_DN32622_c0_g1_i1.p1, TRINITY_DN79050_c0_g1_i1.p1, TRINITY_DN63467_c0_g1_i1.p1, TRINITY_DN45650_c0_g1_i1.p1, TRINITY_DN65149_c0_g1_i1.p1, TRINITY_DN5726_c0_g1_i15.p1, TRINITY_DN1934_c0_g1_i1.p1, TRINITY_DN23534_c0_g1_i1.p1, TRINITY_DN62742_c0_g1_i1.p1
Chironomus tentans CTENT g1326.t1, g4866.t1, g10508.t1, g15912.t1
Chironomus dilutus CDILU TRINITY_DN2186_c0_g1_i3.p1, TRINITY_DN2239_c0_g1_i3.p1, TRINITY_DN12_c0_g1_i22.p1, TRINITY_DN36012_c0_g1_i1.p1, TRINITY_DN2334_c1_g1_i6.p1
Polypedilum nubifer PNUBI Pn.12849, Pn.01645, Pn.02696, Pn.14182, Pn.14183
Polypedilum vanderplanki PVAND g14654.t1, g14652.t1, g17016.t1, g14653.t1, g15528.t1, g15527.t1, g15529.t1, g2453.t3
Polypedilum pembai PPEMB g1459.t1, g10448.t1, g1031.t1, g13595.t1
Culicoides sonorensis CSONO CSON006085-1, CSON010106-1, CSON009361-1
Aedes aegypti lvpagwg AAEGYL AAEL007765-PE
Anopheles gambiae AGAMB AGAP005246-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation