Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Alaserpin.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2453 g2453.t112 TTS g2453.t112 18036404 18036404
chr_3 g2453 g2453.t112 isoform g2453.t112 18036409 18040157
chr_3 g2453 g2453.t112 exon g2453.t112.exon1 18036409 18036585
chr_3 g2453 g2453.t112 exon g2453.t112.exon2 18038878 18039019
chr_3 g2453 g2453.t112 exon g2453.t112.exon3 18039101 18039238
chr_3 g2453 g2453.t112 cds g2453.t112.CDS1 18039231 18039238
chr_3 g2453 g2453.t112 exon g2453.t112.exon4 18039418 18039684
chr_3 g2453 g2453.t112 cds g2453.t112.CDS2 18039418 18039684
chr_3 g2453 g2453.t112 exon g2453.t112.exon5 18039768 18039975
chr_3 g2453 g2453.t112 cds g2453.t112.CDS3 18039768 18039975
chr_3 g2453 g2453.t112 exon g2453.t112.exon6 18040042 18040157
chr_3 g2453 g2453.t112 cds g2453.t112.CDS4 18040042 18040113
chr_3 g2453 g2453.t112 TSS g2453.t112 18040147 18040147

Sequences

>g2453.t112 Gene=g2453 Length=1048
TAATTCTCTCAGTTTGTGCTCTGACTATCGTGCTAAACGCATCAATGGCGTCACCCTCTG
AAATCGAACAAAAGTTTTCAAAATCAGCCAGCAACTTTGCTGCTAAATTGTACCAAAACT
CAATTCAAGGAAAAACTGGCAATGTAATTATTTCACCTGTCTCAGTTCAAACAGCCGTCA
CTTTGGCTATGTTTGGTGCTGCTGGTGAGACCAAGCAAGAAATGTTAAAAGGTCTCGAAT
ATCAGGGTTTCACTGATCAAATAATTGCTGATAACTATCAACGATTTGGCGAGAGCGTCG
CAAAGACTAATGGATTGAAAATCGCTAATAAGATTTATGTGATGAAAGGCTATTCAGTCA
AGCCAACATTCCAGCAAGTCGCAACAAAGAGTTTCAATTCAGAAGCTGAAGATGTAAATT
TCGCACAAAGTAAAGACTCAGCTGGCAAAATCAATACATGGGTTGAAAATCAAACAAATA
ATAAAATTAAAAATCTTATCTCACCTGATTCATTGGATGCTGACACACGTATGGTTCTTG
TAAATGCCATTTACTTCAAAGGATTCTGGACCTATCAATTTGATCCAAAAGTTGGCTGAA
TTGGAGAGCAAATTGGACACAATTGACTTCAATGAGCTCACAACAAAGATGTATTCGGAA
GAAGTTAATGTTGAATTGCCAAAGTTTAAAATTGAATTTGACATTGAATTGACCGAGCCA
TTAAAGAAGATGGGAATGGAGAAAATGTTCTCAGATGCTGCTCAATTTGATGAATTGCTT
ACATCGACTGAACCTCTCAAGGTTTCACAAGTTGTTCATAAAGCCTTCATTGAAGTCAAT
GAAGAAGGTGCTGAAGCAGCTGCTGCTACAGCAATGATTATGATGTCAAGATGTGCAATG
ATTTCTCGTTCTCAACAATTTATTGCGAACCGTCCATTTATTTTTGCATTGAAATTTGTT
GCAGATGCTTTGTTTGTTGGAAGAATCGAAAATTTTAATTGAAATAAAGTATTACATGCT
TGAATTCAATAAAAATTGTAATGAAAAT

>g2453.t112 Gene=g2453 Length=184
MASPSEIEQKFSKSASNFAAKLYQNSIQGKTGNVIISPVSVQTAVTLAMFGAAGETKQEM
LKGLEYQGFTDQIIADNYQRFGESVAKTNGLKIANKIYVMKGYSVKPTFQQVATKSFNSE
AEDVNFAQSKDSAGKINTWVENQTNNKIKNLISPDSLDADTRMVLVNAIYFKGFWTYQFD
PKVG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g2453.t112 Gene3D G3DSA:3.30.497.10 Antithrombin 2 184 0.00000
2 g2453.t112 PANTHER PTHR11461 SERINE PROTEASE INHIBITOR, SERPIN 15 182 0.00000
1 g2453.t112 Pfam PF00079 Serpin (serine protease inhibitor) 14 182 0.00000
4 g2453.t112 SMART SM00093 serpin2 20 184 0.00085
3 g2453.t112 SUPERFAMILY SSF56574 Serpins 8 182 0.00000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005615 extracellular space CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values