General information for g2453.t41
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Leukocyte elastase inhibitor.
Parent gene
- The parent gene g2453 is located on chr_3: 18040351..18047135 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2453 | g2453.t41 | TTS | g2453.t41 | 18033403 | 18033403 |
| chr_3 | g2453 | g2453.t41 | isoform | g2453.t41 | 18033488 | 18047135 |
| chr_3 | g2453 | g2453.t41 | exon | g2453.t41.exon1 | 18033488 | 18033890 |
| chr_3 | g2453 | g2453.t41 | cds | g2453.t41.CDS1 | 18033757 | 18033890 |
| chr_3 | g2453 | g2453.t41 | exon | g2453.t41.exon2 | 18038878 | 18039019 |
| chr_3 | g2453 | g2453.t41 | cds | g2453.t41.CDS2 | 18038878 | 18039019 |
| chr_3 | g2453 | g2453.t41 | exon | g2453.t41.exon3 | 18039101 | 18039502 |
| chr_3 | g2453 | g2453.t41 | cds | g2453.t41.CDS3 | 18039101 | 18039478 |
| chr_3 | g2453 | g2453.t41 | exon | g2453.t41.exon4 | 18047123 | 18047135 |
| chr_3 | g2453 | g2453.t41 | TSS | g2453.t41 | 18047308 | 18047308 |
Sequences
>g2453.t41 Gene=g2453 Length=960
ATGCTGCAAAAATGATTCATTGGATGCTGACACACGTATGGTTCTTGTAAATGCCATTTA
CTTCAAAGGATTCTGGACCTATCAATTTGATCCAAAAGCAACATTCAAAGCACCATTCTT
TCTCAATGATAATGATAAAGTTGATGTTGATTTCATGAAAATTAAGAAACATTTCAAATA
TGGACGATTTGATGATCTTGATGCAACTGCATTGGAATTGCCTTACAAAGATTCTGATAT
TACAATGTTGATAATTTTACCAAATAAACGCACTGGATTGGCTGAATTGGAGAGCAAATT
GGACACAATTGACTTCAATGAGCTCACAACAAAGATGTATTCGGAAGAAGTTAATGTTGA
ATTGCCAAAGTTTAAAATTGAATTTGACATTGAATTGACCGAGCCATTAAAGAAGATGGG
AATGGAGAAAATGTTCTCAGATGCTGCTCAATTTGATGAATTGCTTACATCGACTGAACC
TCTCAAGGTTTCACAAGTTGTTCATAAAGCCTTCATTGAAGTCAATGAAGAAGGTGCTGA
AGCAGCTGCTGCTACAGCCATCAAAGTAGTTGCACTAAGTGCGATTATTGAAGAAGATAT
TGATTTTCACGTCAACCATCCATTCCAATTTGTAATTATTGATAAGAGTTCAAAATCACC
AATTTTTATTGGACGTGTCAAAAGATTTTAAAATATATATGAATGAATTTATGAAATATA
TTTATTTTATGCATTTAATATTTAAAATTAAGAAATTTGTCTTGACAATGAAGATTTTAA
TTTTTTCATTTGGGATTAACAATGAGATTGATGATAAAAATGACTTGAAATTTCTTTCTT
ATTCATTTTATTAGGAATGGCATTTAACATGATACGACCAGCAATGCCTAGACCTTTAAT
AATTTTTAAAGCTGATCATTCATTTTTATTTATGTTAAAGAACAGAATGGAAAGTTTATT
>g2453.t41 Gene=g2453 Length=217
MVLVNAIYFKGFWTYQFDPKATFKAPFFLNDNDKVDVDFMKIKKHFKYGRFDDLDATALE
LPYKDSDITMLIILPNKRTGLAELESKLDTIDFNELTTKMYSEEVNVELPKFKIEFDIEL
TEPLKKMGMEKMFSDAAQFDELLTSTEPLKVSQVVHKAFIEVNEEGAEAAAATAIKVVAL
SAIIEEDIDFHVNHPFQFVIIDKSSKSPIFIGRVKRF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g2453.t41 | Gene3D | G3DSA:3.30.497.10 | Antithrombin | 1 | 179 | 0 |
| 6 | g2453.t41 | Gene3D | G3DSA:2.30.39.10 | - | 14 | 213 | 0 |
| 2 | g2453.t41 | PANTHER | PTHR11461 | SERINE PROTEASE INHIBITOR, SERPIN | 1 | 214 | 0 |
| 3 | g2453.t41 | PANTHER | PTHR11461:SF180 | LEUKOCYTE ELASTASE INHIBITOR | 1 | 214 | 0 |
| 1 | g2453.t41 | Pfam | PF00079 | Serpin (serine protease inhibitor) | 1 | 214 | 0 |
| 5 | g2453.t41 | SMART | SM00093 | serpin2 | 1 | 217 | 0 |
| 4 | g2453.t41 | SUPERFAMILY | SSF56574 | Serpins | 1 | 214 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005615 | extracellular space | CC |
| GO:0004867 | serine-type endopeptidase inhibitor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
