Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Serine protease inhibitor 3/4 .

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2453 g2453.t127 TTS g2453.t127 18037381 18037381
chr_3 g2453 g2453.t127 isoform g2453.t127 18037487 18039859
chr_3 g2453 g2453.t127 exon g2453.t127.exon1 18037487 18037677
chr_3 g2453 g2453.t127 exon g2453.t127.exon2 18038878 18039007
chr_3 g2453 g2453.t127 exon g2453.t127.exon3 18039101 18039168
chr_3 g2453 g2453.t127 cds g2453.t127.CDS1 18039162 18039168
chr_3 g2453 g2453.t127 exon g2453.t127.exon4 18039252 18039684
chr_3 g2453 g2453.t127 cds g2453.t127.CDS2 18039252 18039667
chr_3 g2453 g2453.t127 exon g2453.t127.exon5 18039768 18039859
chr_3 g2453 g2453.t127 TSS g2453.t127 18040147 18040147

Sequences

>g2453.t127 Gene=g2453 Length=914
TCTCGAATATCAGGGTTTCACTGATCAAATAATTGCTGATAACTATCAACGATTTGGCGA
GAGCGTCGCAAAGACTAATGGATTGAAAATCGCTAATAAGATTTATGTGATGAAAGGCTA
TTCAGTCAAGCCAACATTCCAGCAAGTCGCAACAAAGAGTTTCAATTCAGAAGCTGAAGA
TGTAAATTTCGCACAAAGTAAAGACTCAGCTGGCAAAATCAATACATGGGTTGAAAATCA
AACAAATAATAAAATTAAAAATCTTATCTCACCTGATTCATTGGATGCTGACACACGTAT
GGTTCTTGTAAATGCCATTTACTTCAAAGGATTCTGGACCTATCAATTTGATCCAAAAGC
AACATTCAAAGCACCATTCTTTCTCAATGATAATGATAAAGTTGATGTTGATTTCATGAA
AATTAAGAAACATTTCAAATATGGACGATTTGATGATCTTGATGCAACTGCATTGGAATT
GCCTTACAAAGATTCTGATATTACAATGTTGATAATTTTACCAAAAAGTTAATGTTGAAT
TGCCAAAGTTTAAAATTGAATTTGACATTGAATTGACCGAGCCATTAAAGAAGAAAATGT
TCTCAGATGCTGCTCAATTTGATGAATTGCTTACATCGACTGAACCTCTCAAGGTTTCAC
AAGTTGTTCATAAAGCCTTCATTGAAGTCAATGAAGAAGGTGCTGAAGCAGCTGCTGCTA
CAGGCATGATTTTTATGCAATGCAGCCTTAGGGAAAATCCATCTTTTAAAGTTAATCATC
CGTTTTTATTTGTTCTAAAAACACCTTTGGGTTCTTACTTCATTGGACGATTGCAAAACT
TTTAAAAATTCAACAAATACAATTTATTATTAATTAAATTTGTTCATAATAAAAAAATGA
CGTTTTCAAGTAGG

>g2453.t127 Gene=g2453 Length=140
MKGYSVKPTFQQVATKSFNSEAEDVNFAQSKDSAGKINTWVENQTNNKIKNLISPDSLDA
DTRMVLVNAIYFKGFWTYQFDPKATFKAPFFLNDNDKVDVDFMKIKKHFKYGRFDDLDAT
ALELPYKDSDITMLIILPKS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g2453.t127 Gene3D G3DSA:3.30.497.10 Antithrombin 2 71 0.0000
6 g2453.t127 Gene3D G3DSA:2.30.39.10 - 72 139 0.0000
2 g2453.t127 PANTHER PTHR11461 SERINE PROTEASE INHIBITOR, SERPIN 4 139 0.0000
3 g2453.t127 PANTHER PTHR11461:SF180 LEUKOCYTE ELASTASE INHIBITOR 4 139 0.0000
1 g2453.t127 Pfam PF00079 Serpin (serine protease inhibitor) 2 139 0.0000
5 g2453.t127 SMART SM00093 serpin2 1 140 0.0017
4 g2453.t127 SUPERFAMILY SSF56574 Serpins 2 139 0.0000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005615 extracellular space CC
GO:0004867 serine-type endopeptidase inhibitor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed