General information for g2453.t28
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2453 is located on chr_3: 18040351..18047135 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2453 | g2453.t28 | TTS | g2453.t28 | 18033055 | 18033055 |
| chr_3 | g2453 | g2453.t28 | isoform | g2453.t28 | 18033269 | 18039356 |
| chr_3 | g2453 | g2453.t28 | exon | g2453.t28.exon1 | 18033269 | 18033593 |
| chr_3 | g2453 | g2453.t28 | cds | g2453.t28.CDS1 | 18033463 | 18033593 |
| chr_3 | g2453 | g2453.t28 | exon | g2453.t28.exon2 | 18038878 | 18039019 |
| chr_3 | g2453 | g2453.t28 | cds | g2453.t28.CDS2 | 18038878 | 18039019 |
| chr_3 | g2453 | g2453.t28 | exon | g2453.t28.exon3 | 18039101 | 18039356 |
| chr_3 | g2453 | g2453.t28 | cds | g2453.t28.CDS3 | 18039101 | 18039271 |
| chr_3 | g2453 | g2453.t28 | TSS | g2453.t28 | 18040147 | 18040147 |
Sequences
>g2453.t28 Gene=g2453 Length=723
AATTAAGAAACATTTCAAATATGGACGATTTGATGATCTTGATGCAACTGCATTGGAATT
GCCTTACAAAGATTCTGATATTACAATGTTGATAATTTTACCAAATAAACGCACTGGATT
GGCTGAATTGGAGAGCAAATTGGACACAATTGACTTCAATGAGCTCACAACAAAGATGTA
TTCGGAAGAAGTTAATGTTGAATTGCCAAAGTTTAAAATTGAATTTGACATTGAATTGAC
CGAGCCATTAAAGAAGATGGGAATGGAGAAAATGTTCTCAGATGCTGCTCAATTTGATGA
ATTGCTTACATCGACTGAACCTCTCAAGGTTTCACAAGTTGTTCATAAAGCCTTCATTGA
AGTCAATGAAGAAGGTGCTGAAGCAGCTGCTGCTACAGGAATGGCATTTAACATGATACG
ACCAGCAATGCCTAGACCTTTAATAATTTTTAAAGCTGATCATTCATTTTTATTTATGTT
AAAGAACAGAATGGAAAGTTTATTCTTAGGAAGATTGAGAAATGTTTAAAGACTTCTTTT
CTGTAAGACAAAACAATGAGAAAAAATAAAAAAATATCTTAACCACAGCACTAAACTTTC
TTTTCAAAATTAAACAAAAAAACTTTTTTTGGTGTTTTTAGTTTAATTAACAAAATTTAT
ACTTTTAAATTAGATTAGAAAATTCTTGGAAAATCCTTTTTGATTTGTTTTCTTATTAAA
ACA
>g2453.t28 Gene=g2453 Length=147
MLIILPNKRTGLAELESKLDTIDFNELTTKMYSEEVNVELPKFKIEFDIELTEPLKKMGM
EKMFSDAAQFDELLTSTEPLKVSQVVHKAFIEVNEEGAEAAAATGMAFNMIRPAMPRPLI
IFKADHSFLFMLKNRMESLFLGRLRNV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g2453.t28 | Gene3D | G3DSA:2.30.39.10 | - | 1 | 143 | 1.4E-45 |
| 7 | g2453.t28 | Gene3D | G3DSA:3.30.497.10 | Antithrombin | 43 | 114 | 1.4E-45 |
| 2 | g2453.t28 | PANTHER | PTHR11461 | SERINE PROTEASE INHIBITOR, SERPIN | 2 | 142 | 2.5E-32 |
| 3 | g2453.t28 | PANTHER | PTHR11461:SF112 | SERPIN | 2 | 142 | 2.5E-32 |
| 1 | g2453.t28 | Pfam | PF00079 | Serpin (serine protease inhibitor) | 1 | 146 | 1.4E-39 |
| 5 | g2453.t28 | ProSitePatterns | PS00284 | Serpins signature. | 122 | 132 | - |
| 4 | g2453.t28 | SUPERFAMILY | SSF56574 | Serpins | 1 | 146 | 4.71E-43 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005615 | extracellular space | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
