Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Leukocyte elastase inhibitor.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2453 g2453.t178 TTS g2453.t178 18038507 18038507
chr_3 g2453 g2453.t178 isoform g2453.t178 18039188 18040035
chr_3 g2453 g2453.t178 exon g2453.t178.exon1 18039188 18039501
chr_3 g2453 g2453.t178 cds g2453.t178.CDS1 18039188 18039501
chr_3 g2453 g2453.t178 exon g2453.t178.exon2 18039565 18039695
chr_3 g2453 g2453.t178 cds g2453.t178.CDS2 18039565 18039695
chr_3 g2453 g2453.t178 exon g2453.t178.exon3 18039752 18040035
chr_3 g2453 g2453.t178 cds g2453.t178.CDS3 18039752 18039903
chr_3 g2453 g2453.t178 TSS g2453.t178 18040147 18040147

Sequences

>g2453.t178 Gene=g2453 Length=729
TTGAATTTTTTAAACTTTTATTTTAACTTTTTCAACAAGTGTTTTTGTCACTTTATTTAG
AACTCAATTCAAGGAAAAACTGGCAATGTAATTATTTCACCTGTCTCAGTTCAAACAGCC
GTCACTTTGGCTATGTTTGGTGCTGCTGGTGAGACCAAGCAAGAAATGTTAAAAGGTCTC
GAATATCAGGGTTTCACTGATCAAATAATTGCTGATAACTATCAACGATTTGGCGAGAGC
GTCGCAAAGACTAATGGATTGAAAATCGGTAAGAAAACCTTCAGCGCACATGCAGCTAAT
AAGATTTATGTGATGAAAGGCTATTCAGTCAAGCCAACATTCCAGCAAGTCGCAACAAAG
AGTTTCAATTCAGAAGCTGAAGATGTAAATTTCGCACAAAGTAAAGACTCAGCTGATTCA
TTGGATGCTGACACACGTATGGTTCTTGTAAATGCCATTTACTTCAAAGGATTCTGGACC
TATCAATTTGATCCAAAAGCAACATTCAAAGCACCATTCTTTCTCAATGATAATGATAAA
GTTGATGTTGATTTCATGAAAATTAAGAAACATTTCAAATATGGACGATTTGATGATCTT
GATGCAACTGCATTGGAATTGCCTTACAAAGATTCTGATATTACAATGTTGATAATTTTA
CCAAATAAACGCACTGGATTGGCTGAATTGGAGAGCAAATTGGACACAATTGACTTCAAT
GAGCTCACA

>g2453.t178 Gene=g2453 Length=199
MFGAAGETKQEMLKGLEYQGFTDQIIADNYQRFGESVAKTNGLKIGKKTFSAHAANKIYV
MKGYSVKPTFQQVATKSFNSEAEDVNFAQSKDSADSLDADTRMVLVNAIYFKGFWTYQFD
PKATFKAPFFLNDNDKVDVDFMKIKKHFKYGRFDDLDATALELPYKDSDITMLIILPNKR
TGLAELESKLDTIDFNELT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g2453.t178 Gene3D G3DSA:3.30.497.10 Antithrombin 1 93 0e+00
10 g2453.t178 Gene3D G3DSA:3.30.497.10 Antithrombin 94 114 0e+00
9 g2453.t178 Gene3D G3DSA:2.30.39.10 - 115 198 0e+00
4 g2453.t178 PANTHER PTHR11461 SERINE PROTEASE INHIBITOR, SERPIN 21 94 0e+00
6 g2453.t178 PANTHER PTHR11461:SF180 LEUKOCYTE ELASTASE INHIBITOR 21 94 0e+00
3 g2453.t178 PANTHER PTHR11461 SERINE PROTEASE INHIBITOR, SERPIN 94 194 0e+00
5 g2453.t178 PANTHER PTHR11461:SF180 LEUKOCYTE ELASTASE INHIBITOR 94 194 0e+00
2 g2453.t178 Pfam PF00079 Serpin (serine protease inhibitor) 3 95 0e+00
1 g2453.t178 Pfam PF00079 Serpin (serine protease inhibitor) 96 197 0e+00
8 g2453.t178 SMART SM00093 serpin2 2 199 6e-06
7 g2453.t178 SUPERFAMILY SSF56574 Serpins 2 197 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005615 extracellular space CC
GO:0004867 serine-type endopeptidase inhibitor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed