Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Antichymotrypsin-2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2453 g2453.t77 TTS g2453.t77 18035022 18035022
chr_3 g2453 g2453.t77 isoform g2453.t77 18035075 18039984
chr_3 g2453 g2453.t77 exon g2453.t77.exon1 18035075 18035180
chr_3 g2453 g2453.t77 exon g2453.t77.exon2 18036449 18036585
chr_3 g2453 g2453.t77 cds g2453.t77.CDS1 18036455 18036585
chr_3 g2453 g2453.t77 exon g2453.t77.exon3 18038878 18039019
chr_3 g2453 g2453.t77 cds g2453.t77.CDS2 18038878 18039019
chr_3 g2453 g2453.t77 exon g2453.t77.exon4 18039101 18039684
chr_3 g2453 g2453.t77 cds g2453.t77.CDS3 18039101 18039684
chr_3 g2453 g2453.t77 exon g2453.t77.exon5 18039768 18039984
chr_3 g2453 g2453.t77 cds g2453.t77.CDS4 18039768 18039903
chr_3 g2453 g2453.t77 TSS g2453.t77 18040147 18040147

Sequences

>g2453.t77 Gene=g2453 Length=1186
TTTATTTAGAACTCAATTCAAGGAAAAACTGGCAATGTAATTATTTCACCTGTCTCAGTT
CAAACAGCCGTCACTTTGGCTATGTTTGGTGCTGCTGGTGAGACCAAGCAAGAAATGTTA
AAAGGTCTCGAATATCAGGGTTTCACTGATCAAATAATTGCTGATAACTATCAACGATTT
GGCGAGAGCGTCGCAAAGACTAATGGATTGAAAATCGCTAATAAGATTTATGTGATGAAA
GGCTATTCAGTCAAGCCAACATTCCAGCAAGTCGCAACAAAGAGTTTCAATTCAGAAGCT
GAAGATGTAAATTTCGCACAAAGTAAAGACTCAGCTGGCAAAATCAATACATGGGTTGAA
AATCAAACAAATAATAAAATTAAAAATCTTATCTCACCTGATTCATTGGATGCTGACACA
CGTATGGTTCTTGTAAATGCCATTTACTTCAAAGGATTCTGGACCTATCAATTTGATCCA
AAAGCAACATTCAAAGCACCATTCTTTCTCAATGATAATGATAAAGTTGATGTTGATTTC
ATGAAAATTAAGAAACATTTCAAATATGGACGATTTGATGATCTTGATGCAACTGCATTG
GAATTGCCTTACAAAGATTCTGATATTACAATGTTGATAATTTTACCAAATAAACGCACT
GGATTGGCTGAATTGGAGAGCAAATTGGACACAATTGACTTCAATGAGCTCACAACAAAG
ATGTATTCGGAAGAAGTTAATGTTGAATTGCCAAAGTTTAAAATTGAATTTGACATTGAA
TTGACCGAGCCATTAAAGAAGATGGGAATGGAGAAAATGTTCTCAGATGCTGCTCAATTT
GATGAATTGCTTACATCGACTGAACCTCTCAAGGTTTCACAAGTTGTTCATAAAGCCTTC
ATTGAAGTCAATGAAGAAGGTGCTGAAGCAGCTGCTGCTACAGCAATGATTATGATGTCA
AGATGTGCAATGATTTCTCGTTCTCAACAATTTATTGCGAACCGTCCATTTATTTTTGCA
TTGAAATTTGTTGCAGATGCTTTGTTTGTTGGAAGAATCGAAAATTTTAATTGAAATAAA
TTTGGTCATTGGAAAAAAGATTAATTTCAAATGCGATCGTCCATTTTTATTTGCTCTGAT
GAAATCTAATGAGTCATTGTTCATGGGAAGAATTCAAAAATTTTAA

>g2453.t77 Gene=g2453 Length=330
MFGAAGETKQEMLKGLEYQGFTDQIIADNYQRFGESVAKTNGLKIANKIYVMKGYSVKPT
FQQVATKSFNSEAEDVNFAQSKDSAGKINTWVENQTNNKIKNLISPDSLDADTRMVLVNA
IYFKGFWTYQFDPKATFKAPFFLNDNDKVDVDFMKIKKHFKYGRFDDLDATALELPYKDS
DITMLIILPNKRTGLAELESKLDTIDFNELTTKMYSEEVNVELPKFKIEFDIELTEPLKK
MGMEKMFSDAAQFDELLTSTEPLKVSQVVHKAFIEVNEEGAEAAAATAMIMMSRCAMISR
SQQFIANRPFIFALKFVADALFVGRIENFN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g2453.t77 CDD cd19601 serpin42Da-like 2 325 1.62007E-140
8 g2453.t77 Gene3D G3DSA:3.30.497.10 Antithrombin 2 273 4.8E-112
7 g2453.t77 Gene3D G3DSA:2.30.39.10 - 123 324 4.8E-112
2 g2453.t77 PANTHER PTHR11461 SERINE PROTEASE INHIBITOR, SERPIN 38 326 3.5E-80
3 g2453.t77 PANTHER PTHR11461:SF180 LEUKOCYTE ELASTASE INHIBITOR 38 326 3.5E-80
1 g2453.t77 Pfam PF00079 Serpin (serine protease inhibitor) 3 328 6.8E-100
6 g2453.t77 ProSitePatterns PS00284 Serpins signature. 304 314 -
5 g2453.t77 SMART SM00093 serpin2 2 329 9.5E-100
4 g2453.t77 SUPERFAMILY SSF56574 Serpins 2 328 1.31E-106

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005615 extracellular space CC
GO:0004867 serine-type endopeptidase inhibitor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values