General information for g2453.t57
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Serine protease inhibitor 42Dd.
Parent gene
- The parent gene g2453 is located on chr_3: 18040351..18047135 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2453 | g2453.t57 | TTS | g2453.t57 | 18033403 | 18033403 |
| chr_3 | g2453 | g2453.t57 | isoform | g2453.t57 | 18034087 | 18040157 |
| chr_3 | g2453 | g2453.t57 | exon | g2453.t57.exon1 | 18034087 | 18034215 |
| chr_3 | g2453 | g2453.t57 | cds | g2453.t57.CDS1 | 18034091 | 18034215 |
| chr_3 | g2453 | g2453.t57 | exon | g2453.t57.exon2 | 18038878 | 18039019 |
| chr_3 | g2453 | g2453.t57 | cds | g2453.t57.CDS2 | 18038878 | 18039019 |
| chr_3 | g2453 | g2453.t57 | exon | g2453.t57.exon3 | 18039101 | 18039676 |
| chr_3 | g2453 | g2453.t57 | cds | g2453.t57.CDS3 | 18039101 | 18039667 |
| chr_3 | g2453 | g2453.t57 | exon | g2453.t57.exon4 | 18039768 | 18039975 |
| chr_3 | g2453 | g2453.t57 | exon | g2453.t57.exon5 | 18040049 | 18040157 |
| chr_3 | g2453 | g2453.t57 | TSS | g2453.t57 | 18040147 | 18040147 |
Sequences
>g2453.t57 Gene=g2453 Length=1164
TAATTCTCTCAGTTTGTGCTCTGACTATCGTGCTAAACGCATCAATGGCGTCACCCTCTG
AAATCGAACAAAAGTTTTCAAAATCAGCCAGCAACTTTGCTGCTAAATTAACTCAATTCA
AGGAAAAACTGGCAATGTAATTATTTCACCTGTCTCAGTTCAAACAGCCGTCACTTTGGC
TATGTTTGGTGCTGCTGGTGAGACCAAGCAAGAAATGTTAAAAGGTCTCGAATATCAGGG
TTTCACTGATCAAATAATTGCTGATAACTATCAACGATTTGGCGAGAGCGTCGCAAAGAC
TAATGGATTGAAAATCGATTTATGTGATGAAAGGCTATTCAGTCAAGCCAACATTCCAGC
AAGTCGCAACAAAGAGTTTCAATTCAGAAGCTGAAGATGTAAATTTCGCACAAAGTAAAG
ACTCAGCTGGCAAAATCAATACATGGGTTGAAAATCAAACAAATAATAAAATTAAAAATC
TTATCTCACCTGATTCATTGGATGCTGACACACGTATGGTTCTTGTAAATGCCATTTACT
TCAAAGGATTCTGGACCTATCAATTTGATCCAAAAGCAACATTCAAAGCACCATTCTTTC
TCAATGATAATGATAAAGTTGATGTTGATTTCATGAAAATTAAGAAACATTTCAAATATG
GACGATTTGATGATCTTGATGCAACTGCATTGGAATTGCCTTACAAAGATTCTGATATTA
CAATGTTGATAATTTTACCAAATAAACGCACTGGATTGGCTGAATTGGAGAGCAAATTGG
ACACAATTGACTTCAATGAGCTCACAACAAAGATGTATTCGGAAGAAGTTAATGTTGAAT
TGCCAAAGTTTAAAATTGAATTTGACATTGAATTGACCGAGCCATTAAAGAAGATGGGAA
TGGAGAAAATGTTCTCAGATGCTGCTCAATTTGATGAATTGCTTACATCGACTGAACCTC
TCAAGGTTTCACAAGTTGTTCATAAAGCCTTCATTGAAGTCAATGAAGAAGGTGCTGAAG
CAGCTGCTGCTACAGAACTCATTGGGACGGCTTTAAGTATAAGACCACTTCCACGACAAT
TCAAATGCAGACAACCATTTTTGTTTACAATTAAAAAAGAAAAATCTGCAATCTTTTTCG
GAAGAATTAAAAAATTTTAAAATT
>g2453.t57 Gene=g2453 Length=277
MKGYSVKPTFQQVATKSFNSEAEDVNFAQSKDSAGKINTWVENQTNNKIKNLISPDSLDA
DTRMVLVNAIYFKGFWTYQFDPKATFKAPFFLNDNDKVDVDFMKIKKHFKYGRFDDLDAT
ALELPYKDSDITMLIILPNKRTGLAELESKLDTIDFNELTTKMYSEEVNVELPKFKIEFD
IELTEPLKKMGMEKMFSDAAQFDELLTSTEPLKVSQVVHKAFIEVNEEGAEAAAATELIG
TALSIRPLPRQFKCRQPFLFTIKKEKSAIFFGRIKKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g2453.t57 | CDD | cd19601 | serpin42Da-like | 1 | 273 | 0 |
| 7 | g2453.t57 | Gene3D | G3DSA:3.30.497.10 | Antithrombin | 2 | 235 | 0 |
| 6 | g2453.t57 | Gene3D | G3DSA:2.30.39.10 | - | 72 | 232 | 0 |
| 2 | g2453.t57 | PANTHER | PTHR11461 | SERINE PROTEASE INHIBITOR, SERPIN | 4 | 275 | 0 |
| 3 | g2453.t57 | PANTHER | PTHR11461:SF180 | LEUKOCYTE ELASTASE INHIBITOR | 4 | 275 | 0 |
| 1 | g2453.t57 | Pfam | PF00079 | Serpin (serine protease inhibitor) | 2 | 274 | 0 |
| 5 | g2453.t57 | SMART | SM00093 | serpin2 | 1 | 277 | 0 |
| 4 | g2453.t57 | SUPERFAMILY | SSF56574 | Serpins | 2 | 274 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
## Warning: Removed 1 row(s) containing missing values (geom_path).
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005615 | extracellular space | CC |
| GO:0004867 | serine-type endopeptidase inhibitor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed