Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Leukocyte elastase inhibitor.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2453 g2453.t172 TTS g2453.t172 18038507 18038507
chr_3 g2453 g2453.t172 isoform g2453.t172 18038962 18040030
chr_3 g2453 g2453.t172 exon g2453.t172.exon1 18038962 18039501
chr_3 g2453 g2453.t172 cds g2453.t172.CDS1 18039095 18039501
chr_3 g2453 g2453.t172 exon g2453.t172.exon2 18039565 18039696
chr_3 g2453 g2453.t172 cds g2453.t172.CDS2 18039565 18039696
chr_3 g2453 g2453.t172 exon g2453.t172.exon3 18039756 18040030
chr_3 g2453 g2453.t172 cds g2453.t172.CDS3 18039756 18039903
chr_3 g2453 g2453.t172 TSS g2453.t172 18040147 18040147

Sequences

>g2453.t172 Gene=g2453 Length=947
TTTTTTAAACTTTTATTTTAACTTTTTCAACAAGTGTTTTTGTCACTTTATTTAGAACTC
AATTCAAGGAAAAACTGGCAATGTAATTATTTCACCTGTCTCAGTTCAAACAGCCGTCAC
TTTGGCTATGTTTGGTGCTGCTGGTGAGACCAAGCAAGAAATGTTAAAAGGTCTCGAATA
TCAGGGTTTCACTGATCAAATAATTGCTGATAACTATCAACGATTTGGCGAGAGCGTCGC
AAAGACTAATGGATTGAAAATCGGTAAGAAAACCTACGCACATGCAGCTAATAAGATTTA
TGTGATGAAAGGCTATTCAGTCAAGCCAACATTCCAGCAAGTCGCAACAAAGAGTTTCAA
TTCAGAAGCTGAAGATGTAAATTTCGCACAAAGTAAAGACTCAGCTGATTCATTGGATGC
TGACACACGTATGGTTCTTGTAAATGCCATTTACTTCAAAGGATTCTGGACCTATCAATT
TGATCCAAAAGCAACATTCAAAGCACCATTCTTTCTCAATGATAATGATAAAGTTGATGT
TGATTTCATGAAAATTAAGAAACATTTCAAATATGGACGATTTGATGATCTTGATGCAAC
TGCATTGGAATTGCCTTACAAAGATTCTGATATTACAATGTTGATAATTTTACCAAATAA
ACGCACTGGATTGGCTGAATTGGAGAGCAAATTGGACACAATTGACTTCAATGAGCTCAC
AACAAAGATGTATTCGGAAGAAGTTAATGTTGAATTGCCAAAGTTTAAAATTGAATTTGA
CATTGAATTGACCGAGCCATTAAAGAAGGTTTGATAATTAACTTGCGAAAATATTTTGAA
CTTGATAATTTTCTTTGGAAACTAATGTGAAATGTTTTTTTATATTTAGATGGGAATGGA
GAAAATGTTCTCAGATGCTGCTCAATTTGATGAATTGCTTACATCGA

>g2453.t172 Gene=g2453 Length=228
MFGAAGETKQEMLKGLEYQGFTDQIIADNYQRFGESVAKTNGLKIGKKTYAHAANKIYVM
KGYSVKPTFQQVATKSFNSEAEDVNFAQSKDSADSLDADTRMVLVNAIYFKGFWTYQFDP
KATFKAPFFLNDNDKVDVDFMKIKKHFKYGRFDDLDATALELPYKDSDITMLIILPNKRT
GLAELESKLDTIDFNELTTKMYSEEVNVELPKFKIEFDIELTEPLKKV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g2453.t172 Gene3D G3DSA:3.30.497.10 Antithrombin 1 92 0
10 g2453.t172 Gene3D G3DSA:3.30.497.10 Antithrombin 93 227 0
9 g2453.t172 Gene3D G3DSA:2.30.39.10 - 114 210 0
4 g2453.t172 PANTHER PTHR11461 SERINE PROTEASE INHIBITOR, SERPIN 21 93 0
6 g2453.t172 PANTHER PTHR11461:SF180 LEUKOCYTE ELASTASE INHIBITOR 21 93 0
3 g2453.t172 PANTHER PTHR11461 SERINE PROTEASE INHIBITOR, SERPIN 93 227 0
5 g2453.t172 PANTHER PTHR11461:SF180 LEUKOCYTE ELASTASE INHIBITOR 93 227 0
2 g2453.t172 Pfam PF00079 Serpin (serine protease inhibitor) 3 93 0
1 g2453.t172 Pfam PF00079 Serpin (serine protease inhibitor) 95 227 0
8 g2453.t172 SMART SM00093 serpin2 2 224 0
7 g2453.t172 SUPERFAMILY SSF56574 Serpins 2 227 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005615 extracellular space CC
GO:0004867 serine-type endopeptidase inhibitor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values