General information for g2453.t78
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Serine protease inhibitor 42Dd.
Parent gene
- The parent gene g2453 is located on chr_3: 18040351..18047135 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2453 | g2453.t78 | TTS | g2453.t78 | 18035022 | 18035022 |
| chr_3 | g2453 | g2453.t78 | isoform | g2453.t78 | 18035075 | 18040101 |
| chr_3 | g2453 | g2453.t78 | exon | g2453.t78.exon1 | 18035075 | 18035202 |
| chr_3 | g2453 | g2453.t78 | cds | g2453.t78.CDS1 | 18035075 | 18035202 |
| chr_3 | g2453 | g2453.t78 | exon | g2453.t78.exon2 | 18038878 | 18039019 |
| chr_3 | g2453 | g2453.t78 | cds | g2453.t78.CDS2 | 18038878 | 18039019 |
| chr_3 | g2453 | g2453.t78 | exon | g2453.t78.exon3 | 18039101 | 18039606 |
| chr_3 | g2453 | g2453.t78 | cds | g2453.t78.CDS3 | 18039101 | 18039478 |
| chr_3 | g2453 | g2453.t78 | exon | g2453.t78.exon4 | 18040072 | 18040101 |
| chr_3 | g2453 | g2453.t78 | TSS | g2453.t78 | 18040147 | 18040147 |
Sequences
>g2453.t78 Gene=g2453 Length=806
TCTGAAATCGAACAAAAGTTTTCAAAATCAAAGCTGAAGATGTAAATTTCGCACAAAGTA
AAGACTCAGCTGGCAAAATCAATACATGGGTTGAAAATCAAACAAATAATAAAATTAAAA
ATCTTATCTCACCTGATTCATTGGATGCTGACACACGTATGGTTCTTGTAAATGCCATTT
ACTTCAAAGGATTCTGGACCTATCAATTTGATCCAAAAGCAACATTCAAAGCACCATTCT
TTCTCAATGATAATGATAAAGTTGATGTTGATTTCATGAAAATTAAGAAACATTTCAAAT
ATGGACGATTTGATGATCTTGATGCAACTGCATTGGAATTGCCTTACAAAGATTCTGATA
TTACAATGTTGATAATTTTACCAAATAAACGCACTGGATTGGCTGAATTGGAGAGCAAAT
TGGACACAATTGACTTCAATGAGCTCACAACAAAGATGTATTCGGAAGAAGTTAATGTTG
AATTGCCAAAGTTTAAAATTGAATTTGACATTGAATTGACCGAGCCATTAAAGAAGATGG
GAATGGAGAAAATGTTCTCAGATGCTGCTCAATTTGATGAATTGCTTACATCGACTGAAC
CTCTCAAGGTTTCACAAGTTGTTCATAAAGCCTTCATTGAAGTCAATGAAGAAGGTGCTG
AAGCAGCTGCTGCTACAGCAATCATGGTTACATCTTACAGTTTGGTCATTGGAAAAAAGA
TTAATTTCAAATGCGATCGTCCATTTTTATTTGCTCTGATGAAATCTAATGAGTCATTGT
TCATGGGAAGAATTCAAAAATTTTAA
>g2453.t78 Gene=g2453 Length=215
MVLVNAIYFKGFWTYQFDPKATFKAPFFLNDNDKVDVDFMKIKKHFKYGRFDDLDATALE
LPYKDSDITMLIILPNKRTGLAELESKLDTIDFNELTTKMYSEEVNVELPKFKIEFDIEL
TEPLKKMGMEKMFSDAAQFDELLTSTEPLKVSQVVHKAFIEVNEEGAEAAAATAIMVTSY
SLVIGKKINFKCDRPFLFALMKSNESLFMGRIQKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g2453.t78 | Gene3D | G3DSA:3.30.497.10 | Antithrombin | 1 | 159 | 3.1E-77 |
| 7 | g2453.t78 | Gene3D | G3DSA:2.30.39.10 | - | 9 | 210 | 3.1E-77 |
| 2 | g2453.t78 | PANTHER | PTHR11461 | SERINE PROTEASE INHIBITOR, SERPIN | 1 | 213 | 1.4E-55 |
| 3 | g2453.t78 | PANTHER | PTHR11461:SF180 | LEUKOCYTE ELASTASE INHIBITOR | 1 | 213 | 1.4E-55 |
| 1 | g2453.t78 | Pfam | PF00079 | Serpin (serine protease inhibitor) | 1 | 212 | 2.3E-69 |
| 6 | g2453.t78 | ProSitePatterns | PS00284 | Serpins signature. | 190 | 200 | - |
| 5 | g2453.t78 | SMART | SM00093 | serpin2 | 1 | 215 | 5.3E-13 |
| 4 | g2453.t78 | SUPERFAMILY | SSF56574 | Serpins | 1 | 213 | 5.76E-75 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005615 | extracellular space | CC |
| GO:0004867 | serine-type endopeptidase inhibitor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
