General information for g2453.t180
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2453 is located on chr_3: 18040351..18047135 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2453 | g2453.t180 | TTS | g2453.t180 | 18038507 | 18038507 |
| chr_3 | g2453 | g2453.t180 | isoform | g2453.t180 | 18039310 | 18039974 |
| chr_3 | g2453 | g2453.t180 | exon | g2453.t180.exon1 | 18039310 | 18039509 |
| chr_3 | g2453 | g2453.t180 | cds | g2453.t180.CDS1 | 18039466 | 18039509 |
| chr_3 | g2453 | g2453.t180 | exon | g2453.t180.exon2 | 18039580 | 18039696 |
| chr_3 | g2453 | g2453.t180 | cds | g2453.t180.CDS2 | 18039580 | 18039696 |
| chr_3 | g2453 | g2453.t180 | exon | g2453.t180.exon3 | 18039756 | 18039974 |
| chr_3 | g2453 | g2453.t180 | cds | g2453.t180.CDS3 | 18039756 | 18039903 |
| chr_3 | g2453 | g2453.t180 | TSS | g2453.t180 | 18040147 | 18040147 |
Sequences
>g2453.t180 Gene=g2453 Length=536
ACTCAATTCAAGGAAAAACTGGCAATGTAATTATTTCACCTGTCTCAGTTCAAACAGCCG
TCACTTTGGCTATGTTTGGTGCTGCTGGTGAGACCAAGCAAGAAATGTTAAAAGGTCTCG
AATATCAGGGTTTCACTGATCAAATAATTGCTGATAACTATCAACGATTTGGCGAGAGCG
TCGCAAAGACTAATGGATTGAAAATCGGTAAGAAAACCTACGCACATGCAGCTAATAAGA
TTTATGTGATGAAAGGCTATTCAGTCAAGCCAACATTCCAGCAAGTCGCAACAAAGAGTT
TCAATTCAGAAGCTGAAGATGTAAATTTCGCACAAACTCACCTGATTCATTGGATGCTGA
CACACGTATGGTTCTTGTAAATGCCATTTACTTCAAAGGATTCTGGACCTATCAATTTGA
TCCAAAAGCAACATTCAAAGCACCATTCTTTCTCAATGATAATGATAAAGTTGATGTTGA
TTTCATGAAAATTAAGAAACATTTCAAATATGGACGATTTGATGATCTTGATGCAA
>g2453.t180 Gene=g2453 Length=102
MFGAAGETKQEMLKGLEYQGFTDQIIADNYQRFGESVAKTNGLKIGKKTYAHAANKIYVM
KGYSVKPTFQQVATKSFNSEAEDVNFAQTHLIHWMLTHVWFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g2453.t180 | Gene3D | G3DSA:3.30.497.10 | Antithrombin | 1 | 91 | 0 |
| 1 | g2453.t180 | Pfam | PF00079 | Serpin (serine protease inhibitor) | 3 | 89 | 0 |
| 2 | g2453.t180 | SUPERFAMILY | SSF56574 | Serpins | 2 | 87 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
## Warning: Removed 1 row(s) containing missing values (geom_path).
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
