Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Serine protease inhibitor 42Dd.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2453 g2453.t60 TTS g2453.t60 18033403 18033403
chr_3 g2453 g2453.t60 isoform g2453.t60 18034087 18047135
chr_3 g2453 g2453.t60 exon g2453.t60.exon1 18034087 18034215
chr_3 g2453 g2453.t60 cds g2453.t60.CDS1 18034091 18034215
chr_3 g2453 g2453.t60 exon g2453.t60.exon2 18038878 18039019
chr_3 g2453 g2453.t60 cds g2453.t60.CDS2 18038878 18039019
chr_3 g2453 g2453.t60 exon g2453.t60.exon3 18039101 18039676
chr_3 g2453 g2453.t60 cds g2453.t60.CDS3 18039101 18039478
chr_3 g2453 g2453.t60 exon g2453.t60.exon4 18039768 18039975
chr_3 g2453 g2453.t60 exon g2453.t60.exon5 18040042 18040157
chr_3 g2453 g2453.t60 exon g2453.t60.exon6 18047123 18047135
chr_3 g2453 g2453.t60 TSS g2453.t60 18047308 18047308

Sequences

>g2453.t60 Gene=g2453 Length=1184
ATGCTGCAAAAATTAATTCTCTCAGTTTGTGCTCTGACTATCGTGCTAAACGCATCAATG
GCGTCACCCTCTGAAATCGAACAAAAGTTTTCAAAATCAGCCAGCAACTTTGCTGCTAAA
TTGTACCAAAACTCAATTCAAGGAAAAACTGGCAATGTAATTATTTCACCTGTCTCAGTT
CAAACAGCCGTCACTTTGGCTATGTTTGGTGCTGCTGGTGAGACCAAGCAAGAAATGTTA
AAAGGTCTCGAATATCAGGGTTTCACTGATCAAATAATTGCTGATAACTATCAACGATTT
GGCGAGAGCGTCGCAAAGACTAATGGATTGAAAATCGATTTATGTGATGAAAGGCTATTC
AGTCAAGCCAACATTCCAGCAAGTCGCAACAAAGAGTTTCAATTCAGAAGCTGAAGATGT
AAATTTCGCACAAAGTAAAGACTCAGCTGGCAAAATCAATACATGGGTTGAAAATCAAAC
AAATAATAAAATTAAAAATCTTATCTCACCTGATTCATTGGATGCTGACACACGTATGGT
TCTTGTAAATGCCATTTACTTCAAAGGATTCTGGACCTATCAATTTGATCCAAAAGCAAC
ATTCAAAGCACCATTCTTTCTCAATGATAATGATAAAGTTGATGTTGATTTCATGAAAAT
TAAGAAACATTTCAAATATGGACGATTTGATGATCTTGATGCAACTGCATTGGAATTGCC
TTACAAAGATTCTGATATTACAATGTTGATAATTTTACCAAATAAACGCACTGGATTGGC
TGAATTGGAGAGCAAATTGGACACAATTGACTTCAATGAGCTCACAACAAAGATGTATTC
GGAAGAAGTTAATGTTGAATTGCCAAAGTTTAAAATTGAATTTGACATTGAATTGACCGA
GCCATTAAAGAAGATGGGAATGGAGAAAATGTTCTCAGATGCTGCTCAATTTGATGAATT
GCTTACATCGACTGAACCTCTCAAGGTTTCACAAGTTGTTCATAAAGCCTTCATTGAAGT
CAATGAAGAAGGTGCTGAAGCAGCTGCTGCTACAGAACTCATTGGGACGGCTTTAAGTAT
AAGACCACTTCCACGACAATTCAAATGCAGACAACCATTTTTGTTTACAATTAAAAAAGA
AAAATCTGCAATCTTTTTCGGAAGAATTAAAAAATTTTAAAATT

>g2453.t60 Gene=g2453 Length=214
MVLVNAIYFKGFWTYQFDPKATFKAPFFLNDNDKVDVDFMKIKKHFKYGRFDDLDATALE
LPYKDSDITMLIILPNKRTGLAELESKLDTIDFNELTTKMYSEEVNVELPKFKIEFDIEL
TEPLKKMGMEKMFSDAAQFDELLTSTEPLKVSQVVHKAFIEVNEEGAEAAAATELIGTAL
SIRPLPRQFKCRQPFLFTIKKEKSAIFFGRIKKF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g2453.t60 Gene3D G3DSA:3.30.497.10 Antithrombin 1 159 0
6 g2453.t60 Gene3D G3DSA:2.30.39.10 - 9 209 0
2 g2453.t60 PANTHER PTHR11461 SERINE PROTEASE INHIBITOR, SERPIN 1 212 0
3 g2453.t60 PANTHER PTHR11461:SF180 LEUKOCYTE ELASTASE INHIBITOR 1 212 0
1 g2453.t60 Pfam PF00079 Serpin (serine protease inhibitor) 1 211 0
5 g2453.t60 SMART SM00093 serpin2 1 214 0
4 g2453.t60 SUPERFAMILY SSF56574 Serpins 1 211 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

## Warning: Removed 1 row(s) containing missing values (geom_path).

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005615 extracellular space CC
GO:0004867 serine-type endopeptidase inhibitor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed